Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_3296 and Ga0059261_3297 are separated by 289 nucleotidesGa0059261_3297 and Ga0059261_3298 are separated by 161 nucleotidesGa0059261_3298 and Ga0059261_3299 are separated by 71 nucleotidesGa0059261_3299 and Ga0059261_3300 are separated by 118 nucleotides Ga0059261_3296: Ga0059261_3296 - aconitate hydratase 1, at 3,422,256 to 3,424,928 _3296 Ga0059261_3297: Ga0059261_3297 - Uncharacterized protein conserved in bacteria, at 3,425,218 to 3,425,907 _3297 Ga0059261_3298: Ga0059261_3298 - Opacity protein and related surface antigens, at 3,426,069 to 3,426,887 _3298 Ga0059261_3299: Ga0059261_3299 - Secreted and surface protein containing fasciclin-like repeats, at 3,426,959 to 3,427,516 _3299 Ga0059261_3300: Ga0059261_3300 - hypothetical protein, at 3,427,635 to 3,428,603 _3300
Group Condition Ga0059261_3296 Ga0059261_3297 Ga0059261_3298 Ga0059261_3299 Ga0059261_3300
motility inner cut, LB soft agar motility assay N.D. -0.6 +0.4 -0.3 -0.3
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins N.D. -0.3 -0.1 -0.2 -0.1
motility inner cut, LB soft agar motility assay N.D. -0.3 -0.1 +0.1 -0.3
carbon source D-Glucose (C) N.D. -0.3 -0.0 +0.2 -0.1
carbon source L-Glutamic (C) N.D. -0.2 +0.1 +0.0 -0.2
nutrient D-Glucose (C); no added vitamins N.D. -0.3 +0.1 -0.2 +0.2
nutrient D-Glucose (C); no added vitamins N.D. -0.4 +0.1 +0.2 -0.1
temperature LB 37C N.D. -0.2 -0.1 +0.1 +0.0
nitrogen source L-Glutamic (N) N.D. -0.2 -0.1 +0.1 +0.1
pH LB, pH7 N.D. +0.1 -0.1 +0.1 -0.2
carbon source D-Glucose (C) N.D. -0.1 +0.0 -0.2 +0.1
stress Dimethyl Sulfoxide 5 vol% N.D. -0.2 -0.0 +0.1 +0.2
pH LB, pH8 N.D. +0.2 +0.1 -0.0 -0.2
stress Cisplatin 0.01 mg/ml N.D. +0.1 -0.0 +0.1 -0.1
stress D-Cycloserine 0.064 mg/ml N.D. -0.2 -0.0 +0.1 +0.2
pH LB, pH6 N.D. +0.2 -0.1 +0.1 -0.1
stress Chloramphenicol 0.0005 mg/ml N.D. +0.3 -0.0 -0.0 -0.1
stress Chloride 100 mM N.D. -0.2 +0.2 +0.0 +0.1
pH LB, pH7 N.D. +0.2 +0.0 +0.1 -0.1
stress acetate 10 mM N.D. +0.1 -0.1 -0.0 +0.2
carbon source a-Cyclodextrin (C) N.D. +0.2 +0.0 +0.2 -0.1
carbon source casaminos (C) N.D. +0.3 +0.1 -0.0 -0.1
carbon source L-Glutamine (C) N.D. +0.3 +0.0 +0.1 -0.0
motility inner cut, LB soft agar motility assay N.D. +0.0 -0.1 +0.2 +0.2
motility outer cut, LB soft agar motility assay N.D. +0.3 +0.3 -0.4 +0.1
carbon source D-Fructose (C) N.D. +0.4 +0.0 +0.0 -0.1
nitrogen source L-Glutamine (N) N.D. -0.0 +0.1 +0.1 +0.3
carbon source NAG (C) N.D. +0.0 +0.1 +0.2 +0.2
motility inner cut, LB soft agar motility assay N.D. +0.8 -0.2 -0.0 +0.2
motility outer cut, LB soft agar motility assay N.D. +0.2 +0.1 +0.5 +0.0
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