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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_3292 and Ga0059261_3293 are separated by 40 nucleotides
Ga0059261_3293 and Ga0059261_3294 are separated by 93 nucleotides
Ga0059261_3294 and Ga0059261_3295 are separated by 19 nucleotides
Ga0059261_3295 and Ga0059261_3296 are separated by 11 nucleotides
Ga0059261_3292: Ga0059261_3292 - hypothetical protein, at 3,420,695 to 3,421,015
_3292
Ga0059261_3293: Ga0059261_3293 - hypothetical protein, at 3,421,056 to 3,421,415
_3293
Ga0059261_3294: Ga0059261_3294 - hypothetical protein, at 3,421,509 to 3,421,847
_3294
Ga0059261_3295: Ga0059261_3295 - Uncharacterized conserved protein, at 3,421,867 to 3,422,244
_3295
Ga0059261_3296: Ga0059261_3296 - aconitate hydratase 1, at 3,422,256 to 3,424,928
_3296
Group
Condition
Ga0059261
_3292
Ga0059261
_3293
Ga0059261
_3294
Ga0059261
_3295
Ga0059261
_3296
motility
inner cut, LB soft agar motility assay
-0.2
-0.5
N.D.
-0.3
N.D.
stress
methylglyoxal 0.001 vol%
-0.2
-0.3
N.D.
-0.2
N.D.
nitrogen source
L-Glutamic (N)
-0.3
-0.2
N.D.
-0.2
N.D.
stress
Chloramphenicol 0.0025 mg/ml
-0.4
-0.1
N.D.
-0.1
N.D.
stress
Vanillin 0.25 mM
-0.4
-0.1
N.D.
-0.1
N.D.
carbon source
D-Glucose (C)
-0.2
-0.2
N.D.
-0.1
N.D.
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
-0.2
-0.2
N.D.
-0.1
N.D.
stress
Tetracycline 0.001 mg/ml
-0.1
-0.3
N.D.
-0.0
N.D.
nitrogen source
L-Histidine (N)
-0.1
-0.1
N.D.
-0.2
N.D.
stress
Chloramphenicol 0.0001 mg/ml
-0.3
-0.1
N.D.
+0.0
N.D.
motility
outer cut, LB soft agar motility assay
+0.1
-0.2
N.D.
-0.3
N.D.
lb
LB
-0.2
-0.2
N.D.
+0.1
N.D.
temperature
LB 20C
+0.0
-0.2
N.D.
-0.2
N.D.
carbon source
L-Glutamic (C)
+0.1
-0.2
N.D.
-0.2
N.D.
carbon source
D-Glucose (C)
+0.1
-0.3
N.D.
+0.0
N.D.
motility
inner cut, LB soft agar motility assay
+0.4
-0.6
N.D.
-0.0
N.D.
stress
L-Lysine 25 mM
-0.3
+0.1
N.D.
+0.0
N.D.
carbon source
D-Glucose (C)
-0.2
-0.0
N.D.
+0.2
N.D.
motility
inner cut, LB soft agar motility assay
-0.2
+0.0
N.D.
+0.3
N.D.
nitrogen source
L-Glutamine (N)
+0.1
+0.1
N.D.
-0.2
N.D.
stress
Chlorite 1.25 mM
+0.1
+0.2
N.D.
-0.1
N.D.
nutrient
D-Glucose (C); no added vitamins
-0.0
+0.3
N.D.
+0.1
N.D.
stress
nitrite 10 mM
+0.2
+0.1
N.D.
+0.1
N.D.
stress
Thallium(I) acetate 0.005 mg/ml
+0.2
+0.2
N.D.
+0.0
N.D.
stress
Chloride 200 mM
+0.1
+0.2
N.D.
+0.1
N.D.
lb
LB
+0.3
+0.0
N.D.
+0.1
N.D.
motility
outer cut, LB soft agar motility assay
+0.5
-0.1
N.D.
+0.0
N.D.
stress
Sisomicin 0.12 mg/ml
+0.1
+0.2
N.D.
+0.2
N.D.
nutrient
D-Glucose (C); no added vitamins
+0.3
-0.0
N.D.
+0.2
N.D.
motility
inner cut, LB soft agar motility assay
+0.1
+0.3
N.D.
+0.2
N.D.
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