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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_3264 and Ga0059261_3265 are separated by 143 nucleotides
Ga0059261_3265 and Ga0059261_3266 are separated by 54 nucleotides
Ga0059261_3266 and Ga0059261_3267 are separated by 12 nucleotides
Ga0059261_3267 and Ga0059261_3268 overlap by 4 nucleotides
Ga0059261_3264: Ga0059261_3264 - hypothetical protein, at 3,397,924 to 3,398,103
_3264
Ga0059261_3265: Ga0059261_3265 - Glycerol-3-phosphate dehydrogenase, at 3,398,247 to 3,399,380
_3265
Ga0059261_3266: Ga0059261_3266 - ribonuclease R, at 3,399,435 to 3,401,741
_3266
Ga0059261_3267: Ga0059261_3267 - hypothetical protein, at 3,401,754 to 3,402,062
_3267
Ga0059261_3268: Ga0059261_3268 - Uncharacterized conserved protein, at 3,402,059 to 3,403,225
_3268
Group
Condition
Ga0059261
_3264
Ga0059261
_3265
Ga0059261
_3266
Ga0059261
_3267
Ga0059261
_3268
carbon source
NAG (C)
N.D.
-2.8
+0.4
+0.1
+0.1
carbon source
NAG (C)
N.D.
-2.4
+0.4
-0.0
-0.0
carbon source
NAG (C)
N.D.
-2.4
+0.4
+0.0
+0.2
carbon source
NAG (C)
N.D.
-2.2
+0.5
+0.2
+0.0
carbon source
D-Xylose (C)
N.D.
-0.3
+0.4
-0.1
+0.0
motility
inner cut, LB soft agar motility assay
N.D.
-0.4
+0.3
+0.0
+0.1
motility
outer cut, LB soft agar motility assay
N.D.
+0.1
+0.3
+0.1
-0.5
carbon source
D-Cellobiose (C)
N.D.
+0.4
+0.2
+0.1
-0.1
carbon source
D-Xylose (C)
N.D.
-0.2
+0.5
+0.1
+0.2
carbon source
D-Glucose (C)
N.D.
+0.4
+0.2
-0.0
-0.1
nutrient
L-Glutamic (C); no added vitamins
N.D.
+0.2
+0.5
+0.1
-0.2
nitrogen source
L-Histidine (N)
N.D.
-0.1
+0.7
+0.0
+0.0
carbon source
a-Cyclodextrin (C)
N.D.
+0.5
+0.4
-0.1
-0.0
carbon source
L-Glutamine (C)
N.D.
+0.3
+0.5
-0.1
-0.0
nutrient
L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
N.D.
+0.3
+0.2
+0.1
+0.2
nutrient
L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
N.D.
+0.4
+0.2
+0.1
+0.1
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
N.D.
+0.2
+0.4
+0.1
+0.1
nitrogen source
L-Glutamine (N)
N.D.
+0.1
+0.8
+0.0
-0.0
nitrogen source
L-Proline (N)
N.D.
+0.0
+0.9
+0.0
+0.0
carbon source
a-Cyclodextrin (C)
N.D.
+0.4
+0.4
+0.0
+0.1
motility
inner cut, LB soft agar motility assay
N.D.
+0.3
+0.2
-0.1
+0.6
carbon source
D-Maltose (C)
N.D.
+0.6
+0.5
-0.1
-0.0
nutrient
D-Glucose (C); no added vitamins
N.D.
+0.5
+0.9
-0.0
-0.3
carbon source
D-Maltose (C)
N.D.
+0.7
+0.4
-0.1
+0.2
motility
inner cut, LB soft agar motility assay
N.D.
+0.1
+0.2
+0.1
+0.7
nitrogen source
L-Proline (N)
N.D.
+0.1
+1.3
+0.1
-0.0
nutrient
D-Glucose (C); no added vitamins
N.D.
+0.6
+1.0
-0.2
+0.3
nutrient
D-Cellobiose (C); no added vitamins
N.D.
+1.1
+0.8
+0.0
-0.0
nutrient
D-Cellobiose (C); no added vitamins
N.D.
+1.1
+0.9
+0.2
+0.5
nitrogen source
L-Glutamine (N)
N.D.
+0.1
+2.4
+0.1
+0.3
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