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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_3223 and Ga0059261_3224 overlap by 4 nucleotides
Ga0059261_3224 and Ga0059261_3225 are separated by 38 nucleotides
Ga0059261_3225 and Ga0059261_3226 are separated by 78 nucleotides
Ga0059261_3226 and Ga0059261_3227 are separated by 437 nucleotides
Ga0059261_3223: Ga0059261_3223 - hypothetical protein, at 3,354,315 to 3,354,848
_3223
Ga0059261_3224: Ga0059261_3224 - Acyl dehydratase, at 3,354,845 to 3,355,291
_3224
Ga0059261_3225: Ga0059261_3225 - Uncharacterized proteins of the AP superfamily, at 3,355,330 to 3,356,562
_3225
Ga0059261_3226: Ga0059261_3226 - Uncharacterized protein conserved in bacteria, at 3,356,641 to 3,357,477
_3226
Ga0059261_3227: Ga0059261_3227 - GTP-binding protein YchF, at 3,357,915 to 3,359,015
_3227
Group
Condition
Ga0059261
_3223
Ga0059261
_3224
Ga0059261
_3225
Ga0059261
_3226
Ga0059261
_3227
motility
inner cut, LB soft agar motility assay
+0.1
+0.1
+0.1
-0.1
-2.6
pH
LB, pH7
-0.2
-0.1
+0.1
-0.0
-1.6
carbon source
D-Glucose (C)
+0.0
+0.0
-0.2
+0.3
-1.9
stress
Furfuryl Alcohol 0.125 vol%
-0.1
-0.0
-0.1
-0.1
-1.3
stress
syringaldehyde 0.5 mM
+0.0
-0.2
-0.2
+0.0
-1.2
carbon source
L-Glutamine (C)
-0.0
+0.0
+0.0
+0.0
-1.6
motility
inner cut, LB soft agar motility assay
+0.1
+0.3
+0.5
+0.1
-2.5
pH
LB, pH8
+0.0
-0.0
+0.1
+0.1
-1.7
stress
Chloramphenicol 0.0001 mg/ml
+0.1
+0.1
+0.1
-0.2
-1.6
temperature
LB 20C
-0.0
+0.3
-0.2
+0.1
-1.4
carbon source
casaminos (C)
+0.0
-0.2
+0.2
+0.0
-1.3
stress
Cisplatin 0.025 mg/ml
-0.0
+0.0
+0.2
+0.2
-1.5
lb
LB
+0.1
+0.0
+0.1
+0.1
-1.5
motility
inner cut, LB soft agar motility assay
+0.1
+0.2
+0.3
+0.4
-2.0
temperature
LB 30C
+0.0
+0.1
+0.2
+0.0
-1.4
carbon source
L-Glutamic (C)
+0.1
-0.0
+0.1
+0.2
-1.2
stress
Polymyxin B sulfate 0.1 mg/ml
+0.1
+0.0
-0.0
+0.2
-1.1
motility
outer cut, LB soft agar motility assay
+0.1
+0.1
+0.1
+0.4
-1.5
lb
LB
+0.0
+0.1
+0.2
+0.0
-1.1
stress
Tetracycline 0.002 mg/ml
+0.0
+0.1
+0.1
+0.1
-1.1
nitrogen source
L-Alanine (N)
+0.2
+0.1
+0.1
+0.2
-1.0
motility
inner cut, LB soft agar motility assay
+0.2
+0.4
-0.0
+1.0
-2.0
stress
Dimethyl Sulfoxide 5 vol%
+0.2
+0.3
+0.2
+0.3
-0.9
stress
D-Cycloserine 0.064 mg/ml
+0.2
+0.3
+0.2
+0.3
-0.5
motility
outer cut, LB soft agar motility assay
+0.3
+0.9
-0.1
+0.3
-0.9
nitrogen source
L-Histidine (N)
+0.1
+0.2
+0.2
+0.1
+1.0
nitrogen source
L-Proline (N)
+0.1
+0.3
+0.2
-0.1
+1.5
nutrient
D-Cellobiose (C); no added vitamins
+0.1
+0.2
+0.1
+0.3
+1.5
nitrogen source
L-Proline (N)
+0.2
+0.2
+0.0
+0.2
+1.7
nitrogen source
L-Glutamine (N)
+0.2
+0.2
-0.1
+0.1
+2.6
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