Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_3070 and Ga0059261_3071 are separated by 2 nucleotidesGa0059261_3071 and Ga0059261_3072 overlap by 4 nucleotidesGa0059261_3072 and Ga0059261_3073 are separated by 2 nucleotidesGa0059261_3073 and Ga0059261_3074 overlap by 1 nucleotides Ga0059261_3070: Ga0059261_3070 - Type IV secretory pathway, VirD4 components, at 3,210,819 to 3,212,843 _3070 Ga0059261_3071: Ga0059261_3071 - hypothetical protein, at 3,212,846 to 3,213,250 _3071 Ga0059261_3072: Ga0059261_3072 - P-type conjugative transfer ATPase TrbB, at 3,213,247 to 3,214,245 _3072 Ga0059261_3073: Ga0059261_3073 - Type IV secretory pathway, VirB2 components (pilins), at 3,214,248 to 3,214,577 _3073 Ga0059261_3074: Ga0059261_3074 - Type IV secretory pathway, TrbD component, at 3,214,577 to 3,214,852 _3074
Group Condition Ga0059261_3070 Ga0059261_3071 Ga0059261_3072 Ga0059261_3073 Ga0059261_3074
motility outer cut, LB soft agar motility assay -0.0 N.D. -0.1 -1.3 N.D.
motility inner cut, LB soft agar motility assay -0.1 N.D. -0.4 -0.4 N.D.
carbon source casaminos (C) -0.1 N.D. +0.0 -0.4 N.D.
motility inner cut, LB soft agar motility assay +0.2 N.D. -0.2 -0.4 N.D.
stress Cholin acetate 20 mM -0.1 N.D. +0.1 -0.4 N.D.
stress Cholin acetate 40 mM -0.0 N.D. +0.1 -0.4 N.D.
stress 1-ethyl-3-methylimidazolium acetate 10 mM -0.0 N.D. +0.1 -0.4 N.D.
nitrogen source L-Glutamine (N) -0.1 N.D. +0.1 -0.2 N.D.
pH LB, pH6 -0.1 N.D. +0.2 -0.4 N.D.
stress 1-ethyl-3-methylimidazolium acetate 5 mM -0.1 N.D. +0.1 -0.3 N.D.
pH LB, pH8 -0.1 N.D. +0.2 -0.3 N.D.
stress Nalidixic 0.025 mg/ml +0.1 N.D. +0.1 -0.2 N.D.
motility outer cut, LB soft agar motility assay +0.2 N.D. -0.1 -0.1 N.D.
stress Cisplatin 0.01 mg/ml +0.1 N.D. +0.3 -0.3 N.D.
stress Aluminum chloride 4 mM +0.1 N.D. +0.2 -0.2 N.D.
carbon source D-Xylose (C) +0.1 N.D. +0.2 -0.2 N.D.
lb LB -0.1 N.D. +0.1 +0.3 N.D.
lb LB -0.1 N.D. +0.1 +0.3 N.D.
stress Chlorite 0.5 mM -0.0 N.D. -0.1 +0.4 N.D.
stress Lomefloxacin 0.02 mM -0.1 N.D. +0.2 +0.2 N.D.
motility inner cut, LB soft agar motility assay -0.0 N.D. -0.1 +0.6 N.D.
carbon source D-Cellobiose (C) +0.0 N.D. +0.2 +0.3 N.D.
stress nitrite 2.5 mM +0.1 N.D. +0.1 +0.2 N.D.
stress Sisomicin 0.12 mg/ml +0.1 N.D. -0.0 +0.5 N.D.
carbon source L-Glutamic (C) +0.0 N.D. -0.0 +0.6 N.D.
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.1 N.D. +0.1 +0.5 N.D.
motility inner cut, LB soft agar motility assay -0.1 N.D. -0.4 +1.2 N.D.
nutrient D-Cellobiose (C); no added vitamins +0.2 N.D. +0.2 +0.3 N.D.
nutrient D-Cellobiose (C); no added vitamins -0.0 N.D. +0.0 +0.7 N.D.
nutrient D-Glucose (C); no added vitamins -0.1 N.D. +0.2 +0.7 N.D.
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Ga0059261_3070
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Ga0059261_3074
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