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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_2838 and Ga0059261_2839 are separated by 27 nucleotides
Ga0059261_2839 and Ga0059261_2840 are separated by 6 nucleotides
Ga0059261_2840 and Ga0059261_2841 are separated by 7 nucleotides
Ga0059261_2841 and Ga0059261_2842 are separated by 2 nucleotides
Ga0059261_2838: Ga0059261_2838 - Uncharacterized conserved protein, at 2,948,639 to 2,949,169
_2838
Ga0059261_2839: Ga0059261_2839 - Arabinose efflux permease, at 2,949,197 to 2,950,885
_2839
Ga0059261_2840: Ga0059261_2840 - Enoyl-CoA hydratase/carnithine racemase, at 2,950,892 to 2,951,683
_2840
Ga0059261_2841: Ga0059261_2841 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,951,691 to 2,952,497
_2841
Ga0059261_2842: Ga0059261_2842 - SnoaL-like domain, at 2,952,500 to 2,952,916
_2842
Group
Condition
Ga0059261
_2838
Ga0059261
_2839
Ga0059261
_2840
Ga0059261
_2841
Ga0059261
_2842
nutrient
D-Glucose (C); no added vitamins
-0.3
-0.1
-0.8
+0.0
-0.1
motility
inner cut, LB soft agar motility assay
-0.1
-0.1
-0.9
+0.2
-0.1
carbon source
D-Glucose (C)
-0.2
-0.1
-0.4
-0.1
-0.1
stress
Nickel (II) chloride 1.5 mM
-0.0
-0.1
-0.4
+0.0
-0.3
stress
Cobalt chloride 0.08 mM
-0.1
+0.0
-0.6
+0.0
-0.0
carbon source
L-Glutamic (C)
-0.1
+0.0
-0.3
+0.1
-0.2
stress
Thallium(I) acetate 0.01 mg/ml
+0.0
+0.0
-0.3
-0.1
-0.2
carbon source
D-Glucose (C)
-0.1
-0.0
-0.4
-0.1
+0.1
nutrient
D-Cellobiose (C); no added vitamins
+0.1
-0.0
-0.5
+0.1
-0.2
stress
5-Hydroxymethylfurfural 1 mM
-0.0
+0.1
-0.4
+0.1
-0.2
stress
Cisplatin 0.025 mg/ml
-0.0
-0.0
-0.5
+0.1
+0.1
stress
Sisomicin 0.12 mg/ml
+0.1
+0.1
-0.4
-0.0
-0.2
nutrient
D-Glucose (C) and 0.25mM L-Methionine; no added vitamins
+0.1
+0.1
-0.6
+0.1
+0.0
stress
5-Hydroxymethylfurfural 2.5 mM
-0.1
+0.1
-0.4
+0.1
+0.0
stress
syringaldehyde 1 mM
-0.0
-0.0
-0.4
+0.2
+0.3
lb
LB
-0.0
-0.1
+0.3
-0.2
+0.2
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
+0.0
+0.1
+0.2
+0.1
-0.3
stress
L-Lysine 50 mM
-0.0
-0.0
+0.5
-0.1
-0.1
stress
Cholin acetate 40 mM
+0.1
-0.1
+0.5
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
-0.2
-0.1
+1.2
-0.2
-0.3
carbon source
L-Glutamic (C)
+0.1
-0.0
+0.3
+0.1
-0.1
nutrient
D-Glucose (C); no added vitamins
-0.1
+0.1
+0.5
-0.3
+0.3
stress
nitrite 10 mM
+0.2
+0.1
-0.0
-0.1
+0.3
stress
Lomefloxacin 0.01 mM
-0.1
-0.0
+0.3
-0.0
+0.3
nitrogen source
L-Glutamine (N)
-0.1
-0.0
+0.4
-0.0
+0.2
motility
inner cut, LB soft agar motility assay
-0.2
+0.0
+0.5
+0.1
+0.1
stress
acetate 20 mM
+0.1
-0.0
+0.4
+0.0
+0.0
nitrogen source
L-Glutamic (N)
-0.0
+0.0
+0.4
-0.0
+0.3
motility
inner cut, LB soft agar motility assay
+0.2
+0.1
+0.5
+0.0
+0.6
motility
outer cut, LB soft agar motility assay
-0.2
+0.3
+2.0
+0.1
-0.1
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