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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_2808 and Ga0059261_2809 are separated by 19 nucleotides
Ga0059261_2809 and Ga0059261_2810 are separated by 82 nucleotides
Ga0059261_2810 and Ga0059261_2811 are separated by 1 nucleotides
Ga0059261_2811 and Ga0059261_2812 are separated by 29 nucleotides
Ga0059261_2808: Ga0059261_2808 - Acetyl-CoA acetyltransferase, at 2,915,870 to 2,917,045
_2808
Ga0059261_2809: Ga0059261_2809 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,917,065 to 2,918,690
_2809
Ga0059261_2810: Ga0059261_2810 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 2,918,773 to 2,920,101
_2810
Ga0059261_2811: Ga0059261_2811 - Predicted nucleic-acid-binding protein containing a Zn-ribbon, at 2,920,103 to 2,920,528
_2811
Ga0059261_2812: Ga0059261_2812 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 2,920,558 to 2,921,781
_2812
Group
Condition
Ga0059261
_2808
Ga0059261
_2809
Ga0059261
_2810
Ga0059261
_2811
Ga0059261
_2812
motility
inner cut, LB soft agar motility assay
-0.0
-0.2
-0.4
+0.1
-0.0
motility
outer cut, LB soft agar motility assay
+0.0
+0.2
-0.4
-0.2
-0.0
lb
LB
-0.1
+0.0
-0.2
-0.1
-0.0
temperature
LB 20C
-0.2
-0.0
-0.1
-0.1
-0.1
temperature
LB 37C
-0.1
+0.0
-0.2
-0.1
-0.0
stress
D-Cycloserine 0.064 mg/ml
-0.2
+0.0
-0.1
-0.2
+0.0
temperature
LB 30C
-0.1
+0.0
-0.2
-0.1
-0.0
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
+0.1
-0.1
-0.1
-0.1
-0.1
nitrogen source
L-Alanine (N)
-0.1
+0.1
-0.1
-0.1
-0.1
stress
A22 0.01 mg/ml
-0.1
+0.0
-0.2
-0.1
-0.0
nutrient
D-Glucose (C); no added vitamins
-0.2
-0.1
+0.1
-0.1
+0.0
pH
LB, pH7
-0.0
-0.0
-0.3
+0.0
+0.0
stress
Cephalothin 0.3 mg/ml
-0.1
+0.1
-0.1
-0.1
-0.0
stress
Chloramphenicol 0.0025 mg/ml
-0.0
+0.1
-0.1
-0.0
-0.1
nitrogen source
L-Glutamine (N)
-0.2
+0.1
-0.1
+0.0
-0.1
nitrogen source
L-Proline (N)
-0.1
+0.0
+0.1
-0.2
-0.0
stress
Tetracycline 0.002 mg/ml
-0.1
+0.1
-0.2
+0.0
-0.0
stress
Chloride 100 mM
+0.1
-0.0
-0.1
-0.1
+0.1
motility
inner cut, LB soft agar motility assay
-0.1
+0.2
+0.0
+0.1
-0.3
stress
Cobalt chloride 0.04 mM
-0.1
-0.1
+0.2
-0.1
-0.1
carbon source
D-Raffinose (C)
+0.1
-0.0
+0.1
-0.1
-0.1
temperature
LB 20C
-0.1
+0.2
-0.1
+0.1
-0.0
motility
inner cut, LB soft agar motility assay
-0.1
+0.0
+0.5
-0.3
-0.1
stress
1-ethyl-3-methylimidazolium lysine 5 mM
+0.0
+0.1
+0.2
-0.1
-0.1
nitrogen source
L-Proline (N)
+0.1
-0.0
+0.1
-0.1
+0.1
stress
acetate 20 mM
-0.0
+0.1
+0.2
-0.1
-0.1
carbon source
NAG (C)
-0.1
+0.1
+0.1
+0.1
-0.0
stress
Choline Lysine 5 mM
+0.1
+0.2
+0.1
+0.1
-0.1
motility
inner cut, LB soft agar motility assay
-0.0
+0.3
-0.2
+0.4
-0.0
nutrient
D-Cellobiose (C); no added vitamins
+0.2
+0.2
+0.1
+0.0
-0.0
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