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Gene
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Nearby
Cofit
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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500 nt
Ga0059261_2773 and Ga0059261_2774 are separated by 16 nucleotides
Ga0059261_2774 and Ga0059261_2775 are separated by 313 nucleotides
Ga0059261_2775 and Ga0059261_2776 are separated by 200 nucleotides
Ga0059261_2776 and Ga0059261_2777 are separated by 313 nucleotides
Ga0059261_2773: Ga0059261_2773 - Predicted metalloprotease, at 2,878,783 to 2,879,691
_2773
Ga0059261_2774: Ga0059261_2774 - Transcription elongation factor, at 2,879,708 to 2,880,181
_2774
Ga0059261_2775: Ga0059261_2775 - tRNA, at 2,880,495 to 2,880,570
_2775
Ga0059261_2776: Ga0059261_2776 - Helix-turn-helix domain, at 2,880,771 to 2,881,271
_2776
Ga0059261_2777: Ga0059261_2777 - Bacterial regulatory proteins, gntR family, at 2,881,585 to 2,881,869
_2777
Group
Condition
Ga0059261
_2773
Ga0059261
_2774
Ga0059261
_2775
Ga0059261
_2776
Ga0059261
_2777
motility
outer cut, LB soft agar motility assay
-0.3
-3.5
N.D.
+0.2
+0.2
motility
inner cut, LB soft agar motility assay
-0.3
-2.3
N.D.
+0.1
-0.0
nutrient
D-Glucose (C); no added vitamins
-0.3
-0.6
N.D.
-0.1
-0.1
stress
Gentamicin 0.005 mg/ml
-0.1
-0.7
N.D.
-0.1
-0.1
nitrogen source
L-Proline (N)
+0.1
-0.5
N.D.
-0.4
-0.2
lb
LB
-0.0
-0.9
N.D.
-0.0
-0.1
stress
perchlorate 25 mM
-0.2
-0.6
N.D.
-0.2
+0.0
nutrient
D-Glucose (C); no added vitamins
-0.3
-0.8
N.D.
+0.1
+0.0
carbon source
L-Glutamine (C)
-0.1
-0.7
N.D.
-0.0
+0.0
stress
Nalidixic 0.025 mg/ml
-0.0
-0.7
N.D.
-0.0
+0.0
stress
Furfuryl Alcohol 0.125 vol%
-0.1
-0.6
N.D.
-0.1
+0.0
stress
nitrite 2.5 mM
-0.1
-0.7
N.D.
+0.0
+0.0
stress
Phosphomycin 0.005 mg/ml
-0.1
-0.7
N.D.
+0.1
-0.0
stress
Chlorite 0.5 mM
+0.0
-0.6
N.D.
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.2
+0.2
N.D.
-0.4
-0.0
temperature
LB 20C
-0.2
-0.4
N.D.
+0.2
+0.1
motility
inner cut, LB soft agar motility assay
+0.1
-0.9
N.D.
+0.1
+0.6
nitrogen source
L-Glutamine (N)
-0.1
+0.5
N.D.
-0.3
-0.0
motility
inner cut, LB soft agar motility assay
+0.1
+0.6
N.D.
-0.5
-0.1
stress
Choline chloride 40 mM
-0.1
+0.5
N.D.
-0.1
+0.1
stress
Cobalt chloride 0.08 mM
-0.1
+0.8
N.D.
-0.1
-0.1
carbon source
D-Fructose (C)
-0.1
+0.6
N.D.
+0.1
-0.1
nutrient
D-Cellobiose (C); no added vitamins
-0.3
+0.8
N.D.
+0.1
-0.0
stress
Cisplatin 0.01 mg/ml
-0.1
+0.7
N.D.
-0.0
-0.0
carbon source
D-Raffinose (C)
-0.2
+0.8
N.D.
+0.1
+0.0
lb
LB
+0.0
+0.8
N.D.
+0.0
-0.1
stress
Thallium(I) acetate 0.01 mg/ml
-0.1
+0.7
N.D.
+0.1
+0.1
stress
Cholin acetate 20 mM
-0.0
+0.7
N.D.
+0.1
+0.0
lb
LB
-0.0
+0.8
N.D.
+0.1
+0.1
stress
benzoic 0.145 mg/ml
+0.0
+0.8
N.D.
-0.0
+0.1
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