Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_2765 and Ga0059261_2766 are separated by 35 nucleotidesGa0059261_2766 and Ga0059261_2767 are separated by 117 nucleotidesGa0059261_2767 and Ga0059261_2768 are separated by 125 nucleotidesGa0059261_2768 and Ga0059261_2769 overlap by 4 nucleotides Ga0059261_2765: Ga0059261_2765 - Cu/Zn superoxide dismutase, at 2,872,281 to 2,872,880 _2765 Ga0059261_2766: Ga0059261_2766 - 2'-5' RNA ligase, at 2,872,916 to 2,873,458 _2766 Ga0059261_2767: Ga0059261_2767 - Integral membrane protein, interacts with FtsH, at 2,873,576 to 2,874,322 _2767 Ga0059261_2768: Ga0059261_2768 - hypothetical protein, at 2,874,448 to 2,874,708 _2768 Ga0059261_2769: Ga0059261_2769 - amidohydrolase, at 2,874,705 to 2,876,018 _2769
Group Condition Ga0059261_2765 Ga0059261_2766 Ga0059261_2767 Ga0059261_2768 Ga0059261_2769
motility inner cut, LB soft agar motility assay -1.1 +0.0 N.D. -2.5 -0.2
motility inner cut, LB soft agar motility assay -0.0 -0.3 N.D. -1.2 -0.1
nitrogen source L-Glutamine (N) +0.3 +0.1 N.D. -1.1 -0.4
stress L-Lysine 50 mM -0.5 +0.0 N.D. -0.6 -0.1
motility outer cut, LB soft agar motility assay +0.5 -0.4 N.D. -1.1 -0.2
stress Choline Lysine 10 mM -0.2 -0.3 N.D. -0.5 +0.1
nitrogen source L-Proline (N) +0.1 +0.2 N.D. -0.7 -0.3
carbon source D-Raffinose (C) -0.5 -0.2 N.D. +0.1 -0.3
carbon source casaminos (C) -0.4 -0.1 N.D. +0.2 -0.1
stress A22 0.02 mg/ml -0.4 +0.2 N.D. +0.1 -0.1
carbon source a-Cyclodextrin (C) -0.4 -0.1 N.D. +0.4 -0.1
lb LB -0.1 -0.2 N.D. +0.4 -0.1
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins +0.1 -0.5 N.D. +0.2 +0.2
temperature LB 37C -0.1 +0.2 N.D. +0.2 -0.2
stress Chlorite 0.5 mM -0.3 +0.3 N.D. +0.2 +0.0
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins +0.2 -0.2 N.D. +0.4 -0.1
carbon source D-Fructose (C) +0.1 -0.1 N.D. +0.6 -0.2
carbon source L-Glutamic (C) -0.0 +0.1 N.D. +0.6 -0.2
temperature LB 20C -0.2 +0.4 N.D. +0.3 +0.0
pH LB, pH6 -0.4 +0.1 N.D. +0.8 +0.0
stress Phosphomycin 0.005 mg/ml -0.1 +0.3 N.D. +0.5 +0.0
stress nitrite 2.5 mM -0.0 +0.3 N.D. +0.5 -0.0
nutrient D-Glucose (C); no added vitamins +1.7 -0.2 N.D. -0.2 -0.3
nutrient L-Glutamic (C); no added vitamins +0.5 +0.2 N.D. +0.2 +0.0
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins +0.2 +0.4 N.D. +0.5 -0.0
nutrient D-Cellobiose (C); no added vitamins +0.7 +0.2 N.D. +0.6 -0.4
nutrient L-Glutamic (C); no added vitamins +0.7 -0.0 N.D. +0.5 +0.0
motility inner cut, LB soft agar motility assay -0.6 +0.4 N.D. +1.6 -0.1
nutrient D-Glucose (C); no added vitamins +1.7 +0.0 N.D. -0.0 -0.4
nutrient D-Cellobiose (C); no added vitamins +0.9 +0.3 N.D. +0.6 -0.3
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