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Cofit
Protein
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Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_2750 and Ga0059261_2751 are separated by 149 nucleotides
Ga0059261_2751 and Ga0059261_2752 are separated by 49 nucleotides
Ga0059261_2752 and Ga0059261_2753 are separated by 39 nucleotides
Ga0059261_2753 and Ga0059261_2754 are separated by 156 nucleotides
Ga0059261_2750: Ga0059261_2750 - TonB-dependent siderophore receptor, at 2,858,534 to 2,860,681
_2750
Ga0059261_2751: Ga0059261_2751 - Uncharacterized protein conserved in bacteria, at 2,860,831 to 2,861,448
_2751
Ga0059261_2752: Ga0059261_2752 - Cysteine-rich secretory protein family, at 2,861,498 to 2,862,049
_2752
Ga0059261_2753: Ga0059261_2753 - putative oxygen-independent coproporphyrinogen III oxidase, at 2,862,089 to 2,863,225
_2753
Ga0059261_2754: Ga0059261_2754 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 2,863,382 to 2,864,575
_2754
Group
Condition
Ga0059261
_2750
Ga0059261
_2751
Ga0059261
_2752
Ga0059261
_2753
Ga0059261
_2754
stress
copper (II) chloride 0.75 mM
-0.1
-0.1
-0.1
-0.1
-1.0
motility
inner cut, LB soft agar motility assay
-0.0
-0.3
-0.0
-0.3
-0.7
stress
Nickel (II) chloride 1.5 mM
-0.0
-0.1
-0.1
-0.1
-0.9
stress
Gentamicin 0.015 mg/ml
+0.1
-0.1
-0.1
-0.3
-0.8
stress
Chloride 200 mM
+0.1
-0.1
-0.1
-0.0
-0.9
pH
LB, pH6
-0.0
-0.2
-0.2
+0.1
-0.8
stress
Spectinomycin 2 mg/ml
-0.0
-0.1
+0.1
-0.1
-0.9
pH
LB, pH6
-0.1
-0.0
-0.0
-0.2
-0.8
stress
A22 0.02 mg/ml
+0.0
-0.2
-0.5
+0.0
-0.4
stress
Chloramphenicol 0.0025 mg/ml
+0.0
-0.2
+0.2
-0.2
-0.8
stress
nitrate 100 mM
+0.1
-0.0
-0.1
-0.1
-0.8
stress
Fusidic 0.0005 mg/ml
+0.1
+0.2
+0.0
+0.0
-1.3
stress
Tetracycline 0.0005 mg/ml
-0.0
+0.0
-0.0
-0.2
-0.7
stress
Tetracycline 0.001 mg/ml
+0.0
-0.1
-0.1
-0.1
-0.7
pH
LB, pH6
-0.0
+0.0
-0.1
-0.2
-0.6
stress
perchlorate 25 mM
+0.0
-0.4
-0.1
-0.2
-0.3
stress
Polymyxin B sulfate 0.1 mg/ml
+0.0
+0.1
-0.1
+0.1
-0.9
stress
sodium fluoride 10 mM
+0.1
-0.3
+0.0
+0.1
-0.7
stress
Carbenicillin 0.03 mg/ml
+0.1
+0.1
-0.1
-0.1
-0.7
stress
Chloramphenicol 0.0005 mg/ml
-0.0
+0.2
+0.0
-0.2
-0.7
motility
inner cut, LB soft agar motility assay
+0.3
+0.3
-0.1
-0.7
-0.3
motility
outer cut, LB soft agar motility assay
-0.0
+0.4
-0.1
-0.4
-0.3
motility
outer cut, LB soft agar motility assay
+0.0
+0.5
-0.0
-0.4
-0.4
nutrient
D-Glucose (C); no added vitamins
+0.0
+0.3
-0.3
-0.2
+0.5
nutrient
D-Glucose (C); no added vitamins
+0.0
+0.0
-0.1
-0.2
+0.7
carbon source
NAG (C)
+0.0
-0.1
+0.0
-0.2
+0.7
nitrogen source
L-Histidine (N)
+0.0
-0.2
-0.0
-0.0
+0.8
nitrogen source
L-Glutamine (N)
+0.1
+0.2
-0.1
+0.4
+0.2
nitrogen source
L-Proline (N)
+0.1
-0.3
-0.1
+0.3
+0.7
nitrogen source
L-Alanine (N)
+0.0
+0.0
+0.1
-0.1
+0.8
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