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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_2744 and Ga0059261_2745 are separated by 6 nucleotides
Ga0059261_2745 and Ga0059261_2746 are separated by 99 nucleotides
Ga0059261_2746 and Ga0059261_2747 are separated by 0 nucleotides
Ga0059261_2747 and Ga0059261_2748 are separated by 11 nucleotides
Ga0059261_2744: Ga0059261_2744 - CDP-alcohol phosphatidyltransferase, at 2,854,061 to 2,854,915
_2744
Ga0059261_2745: Ga0059261_2745 - Myo-inositol-1-phosphate synthase, at 2,854,922 to 2,856,013
_2745
Ga0059261_2746: Ga0059261_2746 - Predicted sugar nucleotidyltransferases, at 2,856,113 to 2,856,814
_2746
Ga0059261_2747: Ga0059261_2747 - Cupin domain, at 2,856,815 to 2,857,210
_2747
Ga0059261_2748: Ga0059261_2748 - Uncharacterized protein conserved in bacteria, at 2,857,222 to 2,857,722
_2748
Group
Condition
Ga0059261
_2744
Ga0059261
_2745
Ga0059261
_2746
Ga0059261
_2747
Ga0059261
_2748
motility
inner cut, LB soft agar motility assay
-0.5
+0.2
-1.1
+0.5
-0.1
carbon source
L-Glutamine (C)
+0.6
+0.7
+0.4
-0.1
-0.2
carbon source
D-Glucose (C)
+0.5
+0.5
+0.7
+0.3
-0.1
carbon source
D-Glucose (C)
+0.6
+0.4
+1.1
-0.1
-0.0
carbon source
L-Glutamine (C)
+0.8
+0.8
+0.7
+0.1
-0.1
carbon source
D-Raffinose (C)
+0.6
+0.6
+1.0
-0.1
+0.1
carbon source
D-Raffinose (C)
+0.6
+0.6
+1.0
+0.0
+0.1
stress
Tetracycline 0.002 mg/ml
+0.6
+0.5
+0.8
+0.3
+0.1
stress
L-Lysine 50 mM
+0.7
+0.7
+0.9
+0.0
-0.0
carbon source
NAG (C)
+0.8
+0.7
+0.8
+0.1
+0.0
carbon source
NAG (C)
+0.8
+0.8
+0.8
+0.2
+0.0
stress
Polymyxin B sulfate 0.1 mg/ml
+1.1
+1.0
+0.9
-0.0
+0.1
nitrogen source
L-Glutamic (N)
+1.0
+1.1
+1.2
-0.2
+0.1
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
+1.1
+1.2
+1.5
-0.2
-0.0
carbon source
NAG (C)
+1.3
+1.1
+1.6
-0.1
-0.0
carbon source
D-Maltose (C)
+1.1
+1.1
+1.9
+0.1
+0.1
carbon source
NAG (C)
+1.4
+1.2
+1.8
-0.2
+0.1
carbon source
D-Fructose (C)
+1.2
+1.1
+1.9
+0.1
+0.0
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
+1.2
+1.3
+1.9
+0.2
+0.1
nitrogen source
L-Glutamine (N)
+1.6
+1.8
+1.6
+0.1
+0.1
carbon source
D-Maltose (C)
+1.5
+1.4
+2.3
+0.0
+0.0
nitrogen source
L-Histidine (N)
+2.6
+2.6
+2.6
+0.1
+0.1
nitrogen source
L-Alanine (N)
+2.7
+2.6
+2.9
+0.0
-0.1
nutrient
D-Cellobiose (C); no added vitamins
+2.6
+2.2
+3.3
+0.2
+0.1
nitrogen source
L-Proline (N)
+2.9
+3.0
+2.7
-0.1
-0.0
nutrient
D-Cellobiose (C); no added vitamins
+2.5
+2.4
+3.5
+0.1
+0.2
nutrient
D-Glucose (C); no added vitamins
+3.3
+3.3
+4.2
+0.2
+0.3
nutrient
D-Glucose (C); no added vitamins
+3.5
+3.3
+4.3
+0.1
+0.2
nitrogen source
L-Proline (N)
+4.4
+4.7
+4.6
-0.1
-0.1
nitrogen source
L-Glutamine (N)
+5.2
+5.4
+5.1
-0.0
+0.2
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