Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_2574 and Ga0059261_2575 are separated by 96 nucleotidesGa0059261_2575 and Ga0059261_2576 are separated by 238 nucleotidesGa0059261_2576 and Ga0059261_2577 overlap by 4 nucleotidesGa0059261_2577 and Ga0059261_2578 overlap by 4 nucleotides Ga0059261_2574: Ga0059261_2574 - Type IV secretory pathway, VirD4 components, at 2,659,876 to 2,661,852 _2574 Ga0059261_2575: Ga0059261_2575 - Type IV secretory pathway, VirD2 components (relaxase), at 2,661,949 to 2,663,679 _2575 Ga0059261_2576: Ga0059261_2576 - Transglycosylase SLT domain, at 2,663,918 to 2,664,742 _2576 Ga0059261_2577: Ga0059261_2577 - Type IV secretory pathway, protease TraF, at 2,664,739 to 2,665,278 _2577 Ga0059261_2578: Ga0059261_2578 - Protein of unknown function (DUF2840), at 2,665,275 to 2,665,739 _2578
Group Condition Ga0059261_2574 Ga0059261_2575 Ga0059261_2576 Ga0059261_2577 Ga0059261_2578
motility inner cut, LB soft agar motility assay -0.1 -0.1 -0.1 -0.2 -0.4
nitrogen source L-Glutamic (N) -0.1 -0.1 -0.1 -0.2 +0.0
motility inner cut, LB soft agar motility assay -0.0 -0.0 -0.0 -0.4 -0.1
stress syringaldehyde 0.5 mM -0.0 -0.2 -0.0 -0.1 -0.3
nitrogen source L-Glutamine (N) -0.1 -0.0 +0.1 -0.1 -0.3
stress Vanillin 1 mM +0.0 -0.1 -0.0 -0.2 -0.2
pH LB, pH6 +0.0 -0.1 -0.0 -0.2 -0.2
stress nitrite 5 mM -0.1 +0.1 -0.1 -0.1 -0.2
stress perchlorate 25 mM -0.1 +0.0 -0.1 -0.1 +0.1
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins -0.1 -0.0 -0.1 +0.2 -0.1
motility inner cut, LB soft agar motility assay +0.1 -0.1 +0.1 +0.2 -0.4
stress 1-ethyl-3-methylimidazolium acetate 5 mM -0.0 -0.1 +0.1 +0.1 -0.1
nutrient D-Cellobiose (C); no added vitamins -0.0 +0.1 -0.1 -0.2 +0.2
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins +0.0 +0.1 +0.0 -0.3 +0.1
nitrogen source L-Proline (N) -0.0 +0.1 +0.1 -0.2 -0.0
motility inner cut, LB soft agar motility assay +0.0 +0.2 +0.1 +0.2 -0.6
stress Choline chloride 20 mM -0.1 -0.1 +0.1 +0.2 -0.2
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.0 +0.1 -0.1 +0.2 -0.2
lb LB -0.1 +0.2 -0.0 -0.1 +0.1
carbon source D-Maltose (C) -0.0 -0.1 +0.1 -0.1 +0.2
nutrient D-Cellobiose (C); no added vitamins -0.0 +0.1 -0.0 +0.2 -0.2
stress Tetracycline 0.001 mg/ml -0.0 +0.2 +0.0 +0.1 -0.2
motility outer cut, LB soft agar motility assay -0.2 -0.4 +0.0 +0.5 +0.1
pH LB, pH8 +0.0 -0.0 -0.0 +0.3 -0.1
stress 1-ethyl-3-methylimidazolium chloride 5 mM +0.0 +0.0 +0.1 +0.3 -0.1
stress Chloride 200 mM -0.1 +0.2 -0.0 +0.1 +0.2
motility outer cut, LB soft agar motility assay -0.2 +0.4 +0.1 -0.1 +0.1
carbon source L-Glutamic (C) -0.0 +0.1 +0.0 -0.1 +0.4
carbon source D-Glucose (C) +0.1 +0.1 +0.1 +0.1 +0.3
nutrient D-Glucose (C); no added vitamins -0.0 +0.2 +0.1 +0.1 +0.5
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Ga0059261_2574
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