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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_2366 and Ga0059261_2367 are separated by 34 nucleotides
Ga0059261_2367 and Ga0059261_2368 are separated by 10 nucleotides
Ga0059261_2368 and Ga0059261_2369 are separated by 83 nucleotides
Ga0059261_2369 and Ga0059261_2370 are separated by 168 nucleotides
Ga0059261_2366: Ga0059261_2366 - phage contractile tail tube protein, P2 family, at 2,467,145 to 2,467,654
_2366
Ga0059261_2367: Ga0059261_2367 - Phage tail sheath protein FI, at 2,467,689 to 2,468,828
_2367
Ga0059261_2368: Ga0059261_2368 - Phage baseplate assembly protein W, at 2,468,839 to 2,469,195
_2368
Ga0059261_2369: Ga0059261_2369 - phage baseplate assembly protein V, at 2,469,279 to 2,469,851
_2369
Ga0059261_2370: Ga0059261_2370 - hypothetical protein, at 2,470,020 to 2,470,409
_2370
Group
Condition
Ga0059261
_2366
Ga0059261
_2367
Ga0059261
_2368
Ga0059261
_2369
Ga0059261
_2370
motility
outer cut, LB soft agar motility assay
-0.0
-0.4
-1.7
-0.4
+0.4
nutrient
D-Glucose (C); no added vitamins
-0.0
+0.1
-1.4
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
-1.1
+0.0
-0.7
+0.2
+0.2
nitrogen source
L-Glutamine (N)
+0.1
+0.1
-1.2
-0.1
+0.0
motility
inner cut, LB soft agar motility assay
-0.1
-0.0
-1.2
+0.2
+0.3
stress
Dimethyl Sulfoxide 5 vol%
-0.0
+0.0
-1.0
+0.1
+0.1
lb
LB
+0.0
+0.0
-0.7
-0.2
+0.1
stress
A22 0.02 mg/ml
-0.1
+0.1
-0.9
+0.0
+0.0
motility
inner cut, LB soft agar motility assay
-0.4
+0.3
-1.1
+0.6
-0.2
nitrogen source
L-Proline (N)
-0.2
-0.0
-0.6
+0.2
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
+0.2
+0.1
-0.7
-0.1
-0.1
stress
A22 0.01 mg/ml
+0.1
+0.1
-0.7
-0.1
+0.1
nitrogen source
L-Glutamic (N)
+0.1
+0.1
-0.6
-0.1
+0.0
stress
nitrite 5 mM
-0.0
+0.0
-0.7
+0.2
+0.1
stress
Lomefloxacin 0.01 mM
+0.1
+0.1
-0.6
+0.3
+0.1
motility
inner cut, LB soft agar motility assay
+0.5
+0.3
-0.2
-0.4
-0.1
stress
sodium fluoride 10 mM
-0.1
-0.1
+0.6
+0.1
-0.1
carbon source
D-Maltose (C)
+0.1
-0.0
+0.7
-0.1
-0.1
stress
Vanillin 0.25 mM
-0.1
+0.2
+0.5
+0.1
+0.1
stress
Cisplatin 0.025 mg/ml
+0.2
-0.2
+0.7
+0.2
-0.1
stress
Chlorite 1.25 mM
+0.1
-0.1
+0.5
+0.3
+0.2
carbon source
D-Glucose (C)
+0.2
+0.1
+0.5
-0.1
+0.1
lb
LB
+0.1
+0.0
+0.8
-0.1
+0.1
carbon source
L-Glutamine (C)
+0.3
-0.1
+0.7
+0.1
-0.1
stress
Lomefloxacin 0.02 mM
+0.3
+0.2
-0.1
+0.2
+0.3
stress
Gentamicin 0.005 mg/ml
+0.0
+0.2
+0.6
+0.2
-0.0
carbon source
L-Glutamine (C)
+0.1
-0.0
+0.6
+0.3
+0.0
stress
Nalidixic 0.05 mg/ml
+0.2
+0.3
+0.2
+0.1
+0.2
stress
Paraquat dichloride 0.035 mg/ml
+0.1
+0.1
+0.6
+0.1
+0.1
carbon source
D-Glucose (C)
+0.1
-0.1
+0.8
+0.1
+0.2
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