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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_2293 and Ga0059261_2294 overlap by 4 nucleotides
Ga0059261_2294 and Ga0059261_2295 overlap by 1 nucleotides
Ga0059261_2295 and Ga0059261_2296 overlap by 8 nucleotides
Ga0059261_2296 and Ga0059261_2297 are separated by 31 nucleotides
Ga0059261_2293: Ga0059261_2293 - cell division ATP-binding protein FtsE, at 2,396,872 to 2,397,579
_2293
Ga0059261_2294: Ga0059261_2294 - Cell division protein, at 2,397,576 to 2,398,466
_2294
Ga0059261_2295: Ga0059261_2295 - DUF218 domain, at 2,398,466 to 2,399,014
_2295
Ga0059261_2296: Ga0059261_2296 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 2,399,007 to 2,399,693
_2296
Ga0059261_2297: Ga0059261_2297 - Predicted integral membrane protein, at 2,399,725 to 2,400,210
_2297
Group
Condition
Ga0059261
_2293
Ga0059261
_2294
Ga0059261
_2295
Ga0059261
_2296
Ga0059261
_2297
carbon source
a-Cyclodextrin (C)
-0.4
-0.9
-7.8
N.D.
-0.2
carbon source
a-Cyclodextrin (C)
-0.2
-1.4
-7.5
N.D.
+0.2
carbon source
D-Raffinose (C)
+0.0
-1.6
-7.4
N.D.
+0.1
carbon source
D-Maltose (C)
-0.0
+0.2
-7.6
N.D.
+0.0
carbon source
NAG (C)
+0.1
+0.4
-7.5
N.D.
-0.2
nutrient
D-Glucose (C); no added vitamins
+0.5
-0.8
-7.2
N.D.
+0.4
carbon source
D-Fructose (C)
+0.2
-0.4
-6.4
N.D.
-0.1
nitrogen source
L-Alanine (N)
+0.4
-0.3
-6.7
N.D.
+0.1
carbon source
D-Raffinose (C)
+0.0
-0.8
-5.7
N.D.
+0.1
carbon source
D-Maltose (C)
+0.1
-0.1
-5.8
N.D.
-0.1
carbon source
NAG (C)
+0.1
-0.4
-5.6
N.D.
+0.1
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
+0.3
-0.4
-5.0
N.D.
-0.1
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
-0.1
+0.3
-5.4
N.D.
+0.1
stress
Fusidic 0.0005 mg/ml
-0.6
-1.6
-2.6
N.D.
+0.1
carbon source
D-Glucose (C)
+0.5
+0.2
-5.2
N.D.
-0.0
nutrient
D-Cellobiose (C); no added vitamins
-0.1
+0.9
-5.4
N.D.
+0.1
carbon source
NAG (C)
-0.1
+0.3
-4.8
N.D.
+0.1
motility
outer cut, LB soft agar motility assay
-0.3
-2.8
-1.3
N.D.
+0.1
carbon source
NAG (C)
+0.2
+0.1
-4.3
N.D.
+0.0
carbon source
D-Glucose (C)
+0.3
+0.5
-4.6
N.D.
-0.1
carbon source
D-Cellobiose (C)
+0.1
+0.1
-4.0
N.D.
-0.0
nutrient
D-Cellobiose (C); no added vitamins
+0.4
-0.1
-4.2
N.D.
+0.1
nutrient
L-Glutamic (C); no added vitamins
+0.2
+0.4
-4.1
N.D.
+0.1
nitrogen source
L-Histidine (N)
+0.4
-0.7
-2.9
N.D.
-0.0
carbon source
D-Glucose (C)
-0.1
+0.8
-3.9
N.D.
+0.1
carbon source
D-Cellobiose (C)
+0.0
+0.2
-3.5
N.D.
+0.2
nitrogen source
L-Glutamine (N)
+0.8
+0.9
-4.5
N.D.
-0.1
nutrient
L-Glutamic (C); no added vitamins
+0.4
+0.6
-3.6
N.D.
+0.0
carbon source
D-Glucose (C)
+0.1
+0.6
-3.3
N.D.
+0.3
nutrient
L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
+0.1
+0.8
-3.1
N.D.
+0.2
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