Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_2138 and Ga0059261_2139 are separated by 247 nucleotidesGa0059261_2139 and Ga0059261_2140 are separated by 12 nucleotidesGa0059261_2140 and Ga0059261_2141 are separated by 180 nucleotidesGa0059261_2141 and Ga0059261_2142 are separated by 21 nucleotides Ga0059261_2138: Ga0059261_2138 - transcriptional regulator, AraC family, at 2,251,201 to 2,252,013 _2138 Ga0059261_2139: Ga0059261_2139 - Siderophore-interacting FAD-binding domain, at 2,252,261 to 2,253,007 _2139 Ga0059261_2140: Ga0059261_2140 - polyribonucleotide nucleotidyltransferase, at 2,253,020 to 2,255,374 _2140 Ga0059261_2141: Ga0059261_2141 - ribosomal protein S15, bacterial/organelle, at 2,255,555 to 2,255,824 _2141 Ga0059261_2142: Ga0059261_2142 - tRNA pseudouridine(55) synthase, at 2,255,846 to 2,256,760 _2142
Group Condition Ga0059261_2138 Ga0059261_2139 Ga0059261_2140 Ga0059261_2141 Ga0059261_2142
pH LB, pH7 -0.3 -0.3 N.D. N.D. -0.3
pH LB, pH6 -0.3 -0.2 N.D. N.D. -0.2
stress Benzalkonium Chloride 0.0005 mg/ml -0.3 -0.3 N.D. N.D. -0.0
pH LB, pH8 -0.2 -0.3 N.D. N.D. -0.1
stress syringaldehyde 0.5 mM -0.2 -0.1 N.D. N.D. -0.2
carbon source D-Xylose (C) -0.2 -0.1 N.D. N.D. -0.1
carbon source NAG (C) -0.2 -0.2 N.D. N.D. +0.1
motility inner cut, LB soft agar motility assay -0.2 +0.1 N.D. N.D. -0.1
nutrient D-Glucose (C); no added vitamins +0.2 -0.3 N.D. N.D. +0.1
nutrient D-Glucose (C); no added vitamins +0.3 -0.2 N.D. N.D. -0.0
stress Gentamicin 0.015 mg/ml -0.2 +0.1 N.D. N.D. +0.3
motility outer cut, LB soft agar motility assay +0.3 +0.2 N.D. N.D. -0.2
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.1 -0.2 N.D. N.D. +0.5
motility inner cut, LB soft agar motility assay +0.4 -0.1 N.D. N.D. -0.0
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.1 -0.4 N.D. N.D. +0.6
nitrogen source L-Alanine (N) +0.3 +0.3 N.D. N.D. -0.2
motility inner cut, LB soft agar motility assay +0.2 +0.4 N.D. N.D. -0.1
nutrient D-Cellobiose (C); no added vitamins +0.1 -0.0 N.D. N.D. +0.4
stress Sisomicin 0.12 mg/ml -0.1 +0.2 N.D. N.D. +0.3
nitrogen source L-Glutamine (N) -0.1 +0.2 N.D. N.D. +0.4
stress Lomefloxacin 0.01 mM +0.2 +0.3 N.D. N.D. +0.0
lb LB +0.2 +0.3 N.D. N.D. +0.1
nitrogen source L-Glutamic (N) +0.2 +0.3 N.D. N.D. +0.1
temperature LB 20C +0.3 +0.3 N.D. N.D. +0.1
nitrogen source L-Proline (N) +0.3 +0.1 N.D. N.D. +0.4
nitrogen source L-Glutamine (N) +0.3 +0.2 N.D. N.D. +0.3
stress D-Cycloserine 0.064 mg/ml +0.2 +0.3 N.D. N.D. +0.3
lb LB +0.4 +0.3 N.D. N.D. +0.3
motility outer cut, LB soft agar motility assay +0.3 +0.6 N.D. N.D. +0.1
motility inner cut, LB soft agar motility assay +0.2 +0.8 N.D. N.D. +0.4
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