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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_2116 and Ga0059261_2117 are separated by 511 nucleotides
Ga0059261_2117 and Ga0059261_2118 are separated by 323 nucleotides
Ga0059261_2118 and Ga0059261_2119 are separated by 2 nucleotides
Ga0059261_2119 and Ga0059261_2120 are separated by 5 nucleotides
Ga0059261_2116: Ga0059261_2116 - Integrase, at 2,229,573 to 2,230,408
_2116
Ga0059261_2117: Ga0059261_2117 - Transposase and inactivated derivatives, at 2,230,920 to 2,232,151
_2117
Ga0059261_2118: Ga0059261_2118 - flagellar motor stator protein MotA, at 2,232,475 to 2,233,338
_2118
Ga0059261_2119: Ga0059261_2119 - Flagellar motor protein, at 2,233,341 to 2,234,246
_2119
Ga0059261_2120: Ga0059261_2120 - hypothetical protein, at 2,234,252 to 2,234,434
_2120
Group
Condition
Ga0059261
_2116
Ga0059261
_2117
Ga0059261
_2118
Ga0059261
_2119
Ga0059261
_2120
stress
nitrite 2.5 mM
-0.5
-0.6
-0.8
-1.1
-1.6
stress
Paraquat dichloride 0.035 mg/ml
-0.4
-0.6
-0.9
-1.3
-1.1
stress
methylglyoxal 0.005 vol%
-0.5
-0.6
-0.8
-0.9
-1.0
stress
methylglyoxal 0.001 vol%
-0.5
-0.5
-0.6
-1.1
-0.8
carbon source
L-Glutamic (C)
-0.5
-0.6
-0.3
-0.6
-1.4
stress
nitrite 5 mM
-0.3
-0.4
-0.7
-0.6
-1.3
stress
Benzalkonium Chloride 0.0005 mg/ml
-0.4
-0.4
-0.7
-1.0
-0.4
stress
nitrate 100 mM
-0.1
-0.4
-0.7
-0.4
-1.2
stress
5-Hydroxymethylfurfural 1 mM
-0.3
-0.4
-0.6
-0.5
-0.8
motility
outer cut, LB soft agar motility assay
+0.7
+0.8
-0.9
-0.1
+0.6
nitrogen source
L-Glutamic (N)
+0.4
+0.4
+0.7
+0.8
+0.5
nitrogen source
L-Proline (N)
+0.2
+0.1
+0.5
+0.9
+1.1
motility
inner cut, LB soft agar motility assay
+0.7
+0.8
+0.6
+0.3
+0.4
nitrogen source
L-Proline (N)
+0.4
+0.6
+0.7
+1.0
+0.3
temperature
LB 37C
+0.4
+0.6
+0.6
+0.9
+0.6
lb
LB
+0.4
+0.6
+0.6
+0.9
+1.0
motility
outer cut, LB soft agar motility assay
+1.0
+1.4
-0.8
+0.3
+1.8
stress
A22 0.01 mg/ml
+0.4
+0.5
+0.7
+1.2
+1.2
stress
Lomefloxacin 0.02 mM
+0.4
+0.5
+0.9
+1.0
+1.5
lb
LB
+0.5
+0.7
+0.7
+1.3
+1.1
stress
Cephalothin 0.3 mg/ml
+0.5
+0.6
+0.8
+1.3
+1.3
nitrogen source
L-Glutamine (N)
+0.6
+0.7
+1.0
+1.2
+1.1
nitrogen source
L-Glutamic (N)
+0.4
+0.8
+1.3
+1.3
+0.8
motility
inner cut, LB soft agar motility assay
+0.9
+1.0
+0.7
+1.3
+0.9
nitrogen source
L-Alanine (N)
+0.6
+0.8
+1.1
+1.3
+1.4
motility
inner cut, LB soft agar motility assay
+0.8
+0.9
+0.9
+1.3
+1.5
stress
A22 0.02 mg/ml
+0.5
+0.8
+1.0
+1.6
+1.5
stress
Doxycycline hyclate 0.0001 mg/ml
+0.7
+0.8
+1.2
+1.3
+1.4
stress
Lomefloxacin 0.01 mM
+0.6
+0.8
+1.2
+1.4
+1.4
stress
D-Cycloserine 0.064 mg/ml
+0.8
+1.0
+1.3
+1.7
+1.6
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