Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_1965 and Ga0059261_1966 are separated by 38 nucleotidesGa0059261_1966 and Ga0059261_1967 are separated by 111 nucleotidesGa0059261_1967 and Ga0059261_1968 are separated by 11 nucleotidesGa0059261_1968 and Ga0059261_1969 are separated by 30 nucleotides Ga0059261_1965: Ga0059261_1965 - dihydropteroate synthase, at 2,072,170 to 2,073,258 _1965 Ga0059261_1966: Ga0059261_1966 - hypothetical protein, at 2,073,297 to 2,073,839 _1966 Ga0059261_1967: Ga0059261_1967 - Cytochrome B561, at 2,073,951 to 2,074,502 _1967 Ga0059261_1968: Ga0059261_1968 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 2,074,514 to 2,075,269 _1968 Ga0059261_1969: Ga0059261_1969 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 2,075,300 to 2,076,730 _1969
Group Condition Ga0059261_1965 Ga0059261_1966 Ga0059261_1967 Ga0059261_1968 Ga0059261_1969
motility inner cut, LB soft agar motility assay N.D. N.D. -0.2 -0.6 -0.6
motility inner cut, LB soft agar motility assay N.D. N.D. -0.2 -0.1 -0.9
motility inner cut, LB soft agar motility assay N.D. N.D. -0.1 -0.6 -0.3
motility outer cut, LB soft agar motility assay N.D. N.D. -0.0 -0.3 -0.5
nutrient D-Glucose (C); no added vitamins N.D. N.D. -0.3 -0.2 -0.3
temperature LB 20C N.D. N.D. +0.0 -0.2 -0.5
nitrogen source L-Glutamine (N) N.D. N.D. -0.3 -0.2 -0.1
nitrogen source L-Alanine (N) N.D. N.D. -0.1 -0.2 -0.2
stress Cephalothin 0.3 mg/ml N.D. N.D. -0.1 -0.2 -0.2
stress Doxycycline hyclate 0.0001 mg/ml N.D. N.D. -0.1 -0.1 -0.2
nitrogen source L-Proline (N) N.D. N.D. -0.2 -0.2 -0.0
lb LB N.D. N.D. -0.1 -0.1 -0.2
nutrient D-Cellobiose (C); no added vitamins N.D. N.D. -0.1 -0.2 -0.1
stress Lomefloxacin 0.02 mM N.D. N.D. -0.1 -0.0 -0.3
motility inner cut, LB soft agar motility assay N.D. N.D. -0.0 -0.2 -0.2
nitrogen source L-Histidine (N) N.D. N.D. -0.2 -0.2 -0.1
stress A22 0.02 mg/ml N.D. N.D. -0.1 -0.2 -0.1
stress Gentamicin 0.005 mg/ml N.D. N.D. +0.0 -0.1 -0.4
carbon source a-Cyclodextrin (C) N.D. N.D. +0.1 -0.2 -0.2
stress 1-ethyl-3-methylimidazolium acetate 10 mM N.D. N.D. -0.1 +0.1 -0.4
nutrient D-Cellobiose (C); no added vitamins N.D. N.D. -0.2 -0.2 +0.2
carbon source L-Glutamine (C) N.D. N.D. -0.1 +0.1 -0.2
stress Choline chloride 20 mM N.D. N.D. +0.1 +0.1 -0.3
nitrogen source L-Glutamic (N) N.D. N.D. -0.2 -0.1 +0.1
stress 1-ethyl-3-methylimidazolium lysine 2.5 mM N.D. N.D. +0.2 +0.1 -0.3
nitrogen source L-Glutamine (N) N.D. N.D. -0.2 -0.2 +0.3
stress Cholin acetate 10 mM N.D. N.D. +0.1 +0.1 -0.3
carbon source D-Cellobiose (C) N.D. N.D. -0.0 -0.1 +0.3
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins N.D. N.D. -0.0 +0.1 +0.4
carbon source NAG (C) N.D. N.D. +0.2 +0.1 +0.3
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