Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_1960 and Ga0059261_1961 are separated by 313 nucleotidesGa0059261_1961 and Ga0059261_1962 overlap by 8 nucleotidesGa0059261_1962 and Ga0059261_1963 are separated by 209 nucleotidesGa0059261_1963 and Ga0059261_1964 are separated by 343 nucleotides Ga0059261_1960: Ga0059261_1960 - negative transcriptional regulator, PaiB family, at 2,066,426 to 2,067,049 _1960 Ga0059261_1961: Ga0059261_1961 - hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,067,363 to 2,068,142 _1961 Ga0059261_1962: Ga0059261_1962 - RNase HII (EC 3.1.26.4), at 2,068,135 to 2,068,758 _1962 Ga0059261_1963: Ga0059261_1963 - Isocitrate lyase, at 2,068,968 to 2,070,563 _1963 Ga0059261_1964: Ga0059261_1964 - DNA modification methylase, at 2,070,907 to 2,072,055 _1964
Group Condition Ga0059261_1960 Ga0059261_1961 Ga0059261_1962 Ga0059261_1963 Ga0059261_1964
nutrient D-Glucose (C); no added vitamins -0.2 N.D. -1.2 -0.2 N.D.
motility inner cut, LB soft agar motility assay -0.1 N.D. -0.9 -0.2 N.D.
nutrient D-Glucose (C); no added vitamins -0.1 N.D. -0.7 -0.2 N.D.
nutrient D-Cellobiose (C); no added vitamins -0.1 N.D. -0.7 -0.1 N.D.
carbon source NAG (C) -0.1 N.D. -0.8 +0.0 N.D.
pH LB, pH7 +0.1 N.D. -0.8 -0.1 N.D.
carbon source L-Glutamic (C) +0.0 N.D. -0.8 -0.0 N.D.
stress Rifampicin 0.001 mg/ml +0.1 N.D. -0.8 +0.0 N.D.
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins -0.1 N.D. -0.5 -0.1 N.D.
pH LB, pH8 +0.1 N.D. -0.7 -0.0 N.D.
lb LB -0.1 N.D. -0.5 -0.1 N.D.
lb LB -0.0 N.D. -0.5 -0.0 N.D.
nitrogen source L-Alanine (N) +0.0 N.D. -0.5 -0.1 N.D.
motility outer cut, LB soft agar motility assay -0.0 N.D. -0.5 -0.0 N.D.
temperature LB 37C -0.1 N.D. -0.4 -0.2 N.D.
nitrogen source L-Glutamine (N) +0.0 N.D. -0.4 -0.1 N.D.
pH LB, pH6 +0.1 N.D. -0.6 -0.0 N.D.
stress Tetracycline 0.0005 mg/ml +0.1 N.D. -0.5 +0.0 N.D.
stress acetate 10 mM +0.0 N.D. -0.5 +0.2 N.D.
motility inner cut, LB soft agar motility assay -0.2 N.D. -0.2 +0.2 N.D.
motility inner cut, LB soft agar motility assay -0.2 N.D. +0.2 -0.2 N.D.
nitrogen source L-Glutamine (N) -0.3 N.D. +0.4 -0.1 N.D.
carbon source NAG (C) -0.0 N.D. +0.4 -0.1 N.D.
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins -0.1 N.D. +0.4 +0.1 N.D.
motility outer cut, LB soft agar motility assay -0.1 N.D. +0.5 +0.1 N.D.
carbon source D-Raffinose (C) +0.1 N.D. +0.7 -0.2 N.D.
stress Chlorite 0.5 mM +0.1 N.D. +0.5 +0.1 N.D.
stress Nalidixic 0.05 mg/ml +0.1 N.D. +0.4 +0.1 N.D.
stress Tetracycline 0.002 mg/ml +0.2 N.D. +0.4 +0.1 N.D.
motility inner cut, LB soft agar motility assay +0.0 N.D. +0.7 +0.3 N.D.
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Ga0059261_1960
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