Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_1958 and Ga0059261_1959 are separated by 110 nucleotidesGa0059261_1959 and Ga0059261_1960 are separated by 71 nucleotidesGa0059261_1960 and Ga0059261_1961 are separated by 313 nucleotidesGa0059261_1961 and Ga0059261_1962 overlap by 8 nucleotides Ga0059261_1958: Ga0059261_1958 - Transcriptional regulators, at 2,064,877 to 2,065,350 _1958 Ga0059261_1959: Ga0059261_1959 - Predicted permease, DMT superfamily, at 2,065,461 to 2,066,354 _1959 Ga0059261_1960: Ga0059261_1960 - negative transcriptional regulator, PaiB family, at 2,066,426 to 2,067,049 _1960 Ga0059261_1961: Ga0059261_1961 - hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,067,363 to 2,068,142 _1961 Ga0059261_1962: Ga0059261_1962 - RNase HII (EC 3.1.26.4), at 2,068,135 to 2,068,758 _1962
Group Condition Ga0059261_1958 Ga0059261_1959 Ga0059261_1960 Ga0059261_1961 Ga0059261_1962
stress L-Lysine 25 mM -4.5 -5.8 +0.1 N.D. +0.3
stress L-Lysine 50 mM -3.8 -3.0 +0.0 N.D. -0.3
stress Choline Lysine 10 mM -0.4 -5.3 +0.0 N.D. +0.4
nutrient D-Glucose (C); no added vitamins -0.1 -0.2 -0.2 N.D. -1.2
motility outer cut, LB soft agar motility assay -0.7 -0.3 -0.0 N.D. -0.5
nitrogen source L-Glutamine (N) -0.8 -0.0 +0.0 N.D. -0.4
nitrogen source L-Histidine (N) -0.6 -0.3 -0.1 N.D. -0.1
lb LB -0.5 +0.0 -0.1 N.D. -0.5
pH LB, pH8 +0.1 -0.3 +0.1 N.D. -0.7
pH LB, pH7 +0.2 -0.2 +0.1 N.D. -0.8
stress Rifampicin 0.001 mg/ml +0.2 -0.1 +0.1 N.D. -0.8
nitrogen source L-Glutamic (N) -0.5 +0.1 -0.0 N.D. -0.3
carbon source NAG (C) +0.2 +0.1 -0.1 N.D. -0.8
motility inner cut, LB soft agar motility assay -0.4 +0.2 -0.2 N.D. -0.2
carbon source L-Glutamic (C) +0.3 -0.0 +0.0 N.D. -0.8
nutrient D-Cellobiose (C); no added vitamins +0.3 +0.0 -0.1 N.D. -0.7
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.3 -0.1 -0.1 N.D. -0.5
pH LB, pH6 +0.1 -0.1 +0.1 N.D. -0.6
nutrient D-Glucose (C); no added vitamins +0.6 -0.1 -0.1 N.D. -0.7
nitrogen source L-Glutamine (N) -0.3 +0.1 -0.3 N.D. +0.4
motility inner cut, LB soft agar motility assay +0.7 +0.2 -0.1 N.D. -0.9
carbon source D-Glucose (C) +0.4 -0.1 +0.1 N.D. -0.4
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.7 -0.0 +0.0 N.D. -0.3
stress syringaldehyde 0.5 mM +0.5 -0.1 -0.1 N.D. +0.2
motility inner cut, LB soft agar motility assay -0.3 +0.1 +0.0 N.D. +0.7
stress Nalidixic 0.05 mg/ml +0.2 -0.1 +0.1 N.D. +0.4
lb LB +0.5 -0.1 +0.0 N.D. +0.3
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins +0.5 -0.1 -0.1 N.D. +0.4
motility outer cut, LB soft agar motility assay +0.2 +0.3 -0.1 N.D. +0.5
carbon source D-Raffinose (C) +0.2 +0.0 +0.1 N.D. +0.7
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