Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_1679 and Ga0059261_1680 are separated by 22 nucleotidesGa0059261_1680 and Ga0059261_1681 overlap by 4 nucleotidesGa0059261_1681 and Ga0059261_1682 are separated by 2 nucleotidesGa0059261_1682 and Ga0059261_1683 are separated by 30 nucleotides Ga0059261_1679: Ga0059261_1679 - Sugar phosphate permease, at 1,781,330 to 1,782,619 _1679 Ga0059261_1680: Ga0059261_1680 - NAD-dependent aldehyde dehydrogenases, at 1,782,642 to 1,784,051 _1680 Ga0059261_1681: Ga0059261_1681 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 1,784,048 to 1,785,043 _1681 Ga0059261_1682: Ga0059261_1682 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 1,785,046 to 1,786,014 _1682 Ga0059261_1683: Ga0059261_1683 - Rieske [2Fe-2S] domain/Ring hydroxylating alpha subunit (catalytic domain), at 1,786,045 to 1,787,328 _1683
Group Condition Ga0059261_1679 Ga0059261_1680 Ga0059261_1681 Ga0059261_1682 Ga0059261_1683
carbon source L-Glutamic (C) -0.1 -0.1 -0.2 -0.1 -0.1
nutrient D-Glucose (C); no added vitamins -0.3 -0.2 +0.0 +0.0 -0.0
carbon source D-Cellobiose (C) -0.1 -0.2 -0.1 -0.0 -0.0
motility inner cut, LB soft agar motility assay -0.0 -0.1 -0.1 +0.0 -0.2
pH LB, pH6 +0.0 -0.2 -0.1 -0.2 +0.0
nutrient D-Glucose (C); no added vitamins -0.0 -0.2 -0.2 +0.2 -0.1
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins -0.1 -0.0 -0.1 +0.1 -0.1
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins -0.1 -0.2 -0.1 +0.1 +0.0
carbon source D-Xylose (C) -0.0 -0.2 -0.0 +0.1 -0.0
stress nitrite 5 mM +0.1 -0.2 -0.1 -0.1 +0.1
carbon source D-Glucose (C) -0.1 -0.1 +0.1 +0.0 -0.1
stress copper (II) chloride 0.75 mM -0.1 -0.1 -0.0 +0.1 -0.1
nutrient D-Cellobiose (C); no added vitamins +0.0 +0.2 -0.0 -0.3 -0.1
stress 1-ethyl-3-methylimidazolium chloride 20 mM -0.0 -0.0 +0.1 -0.2 +0.1
motility outer cut, LB soft agar motility assay +0.2 -0.2 -0.2 +0.3 -0.1
stress Sisomicin 0.12 mg/ml +0.0 -0.1 -0.1 +0.1 +0.1
nutrient L-Glutamic (C); no added vitamins -0.1 +0.1 -0.0 +0.1 -0.1
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins -0.1 -0.1 +0.1 +0.2 -0.0
motility outer cut, LB soft agar motility assay +0.5 -0.3 +0.1 -0.4 +0.1
stress A22 0.02 mg/ml +0.0 +0.2 +0.0 -0.2 +0.0
stress Vanillin 0.25 mM +0.0 +0.2 -0.1 -0.1 +0.1
stress Tetracycline 0.002 mg/ml -0.0 +0.2 +0.1 -0.2 +0.0
temperature LB 37C -0.0 -0.1 +0.1 +0.0 +0.2
stress 1-ethyl-3-methylimidazolium chloride 5 mM -0.0 -0.1 +0.1 +0.1 +0.1
stress benzoic 0.29 mg/ml +0.1 +0.1 -0.0 +0.2 -0.1
stress Vanillin 1 mM -0.1 +0.2 +0.0 -0.0 +0.1
motility inner cut, LB soft agar motility assay -0.1 -0.4 +0.2 +0.1 +0.5
motility inner cut, LB soft agar motility assay +0.3 +0.2 +0.2 -0.4 +0.1
stress Doxycycline hyclate 0.0001 mg/ml +0.1 +0.0 +0.1 +0.0 +0.1
motility inner cut, LB soft agar motility assay -0.0 +0.0 +0.2 +0.2 +0.5
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