Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_1536 and Ga0059261_1537 are separated by 136 nucleotidesGa0059261_1537 and Ga0059261_1538 are separated by 103 nucleotidesGa0059261_1538 and Ga0059261_1539 overlap by 14 nucleotidesGa0059261_1539 and Ga0059261_1540 are separated by 30 nucleotides Ga0059261_1536: Ga0059261_1536 - Glutathione S-transferase, at 1,611,836 to 1,612,516 _1536 Ga0059261_1537: Ga0059261_1537 - tRNA, at 1,612,653 to 1,612,729 _1537 Ga0059261_1538: Ga0059261_1538 - Predicted transcriptional regulators, at 1,612,833 to 1,613,177 _1538 Ga0059261_1539: Ga0059261_1539 - Uncharacterized conserved protein, at 1,613,164 to 1,613,637 _1539 Ga0059261_1540: Ga0059261_1540 - hypothetical protein, at 1,613,668 to 1,614,525 _1540
Group Condition Ga0059261_1536 Ga0059261_1537 Ga0059261_1538 Ga0059261_1539 Ga0059261_1540
motility inner cut, LB soft agar motility assay -0.2 N.D. -1.8 -0.5 -0.1
motility inner cut, LB soft agar motility assay -0.1 N.D. -1.8 +0.4 +0.0
carbon source L-Glutamine (C) -0.1 N.D. -0.8 -0.1 -0.2
motility outer cut, LB soft agar motility assay -0.1 N.D. +0.2 -0.4 -0.5
nitrogen source L-Glutamic (N) -0.2 N.D. -0.3 -0.1 -0.1
stress Dimethyl Sulfoxide 5 vol% -0.2 N.D. -0.5 -0.0 -0.0
motility inner cut, LB soft agar motility assay -0.0 N.D. -0.5 +0.2 -0.3
carbon source L-Glutamic (C) +0.1 N.D. -0.4 -0.0 -0.3
temperature LB 20C +0.1 N.D. -0.6 -0.0 -0.0
stress Paraquat dichloride 0.035 mg/ml -0.3 N.D. +0.3 -0.1 +0.0
stress perchlorate 25 mM +0.2 N.D. -0.4 +0.0 +0.2
stress Chloramphenicol 0.0001 mg/ml +0.3 N.D. -0.2 -0.2 +0.1
carbon source NAG (C) +0.1 N.D. +0.3 -0.1 -0.2
pH LB, pH8 +0.2 N.D. -0.2 -0.1 +0.2
motility outer cut, LB soft agar motility assay -0.6 N.D. +0.4 +0.4 -0.0
stress Nalidixic 0.025 mg/ml +0.0 N.D. +0.6 -0.3 +0.1
nutrient D-Glucose (C); no added vitamins +0.4 N.D. -0.5 +0.3 +0.0
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins +0.0 N.D. -0.3 +0.2 +0.4
motility inner cut, LB soft agar motility assay +0.3 N.D. -0.9 +0.3 +0.6
pH LB, pH7 +0.1 N.D. +0.4 -0.2 +0.1
stress Nalidixic 0.05 mg/ml -0.0 N.D. +0.5 -0.1 +0.1
stress 1-ethyl-3-methylimidazolium chloride 5 mM +0.1 N.D. +0.4 +0.0 -0.1
stress Choline chloride 20 mM -0.0 N.D. +0.5 +0.1 -0.1
nutrient D-Glucose (C); no added vitamins +0.2 N.D. -0.3 +0.2 +0.5
stress Tetracycline 0.002 mg/ml +0.2 N.D. +0.2 +0.2 +0.2
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.1 N.D. +0.4 +0.0 +0.2
pH LB, pH8 +0.2 N.D. +0.5 -0.2 +0.2
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins +0.1 N.D. +0.5 +0.1 +0.2
carbon source D-Glucose (C) +0.1 N.D. +0.3 +0.2 +0.4
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.3 N.D. +0.8 +0.1 +0.4
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