Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_1004 and Ga0059261_1005 are separated by 782 nucleotidesGa0059261_1005 and Ga0059261_1006 are separated by 89 nucleotidesGa0059261_1006 and Ga0059261_1007 are separated by 100 nucleotidesGa0059261_1007 and Ga0059261_1008 overlap by 4 nucleotides Ga0059261_1004: Ga0059261_1004 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 1,042,142 to 1,043,857 _1004 Ga0059261_1005: Ga0059261_1005 - Immunity protein 33, at 1,044,640 to 1,044,936 _1005 Ga0059261_1006: Ga0059261_1006 - NAD-dependent aldehyde dehydrogenases, at 1,045,026 to 1,046,387 _1006 Ga0059261_1007: Ga0059261_1007 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 1,046,488 to 1,046,733 _1007 Ga0059261_1008: Ga0059261_1008 - Geranylgeranyl pyrophosphate synthase, at 1,046,730 to 1,047,641 _1008
Group Condition Ga0059261_1004 Ga0059261_1005 Ga0059261_1006 Ga0059261_1007 Ga0059261_1008
nutrient L-Glutamic (C); no added vitamins +0.2 -0.1 -0.2 N.D. -2.3
stress sodium fluoride 10 mM +0.0 +0.0 -0.1 N.D. -2.1
pH LB, pH6 -0.1 +0.1 -1.6 N.D. -0.0
motility outer cut, LB soft agar motility assay -0.0 +0.2 -0.9 N.D. -0.9
nutrient L-Glutamic (C); no added vitamins +0.1 +0.1 -0.2 N.D. -1.6
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins +0.1 +0.0 -0.1 N.D. -1.6
pH LB, pH6 -0.1 +0.2 -1.1 N.D. -0.5
stress nitrite 5 mM -0.1 -0.0 -0.7 N.D. -0.6
stress Paraquat dichloride 0.035 mg/ml +0.1 +0.0 -0.2 N.D. -1.2
pH LB, pH6 -0.1 +0.2 -1.4 N.D. +0.1
stress Dimethyl Sulfoxide 5 vol% +0.0 -0.1 -0.3 N.D. -1.0
carbon source NAG (C) -0.2 +0.0 -0.2 N.D. -0.9
nitrogen source L-Proline (N) -0.2 +0.0 -0.2 N.D. -0.9
nitrogen source L-Glutamine (N) -0.1 +0.0 +0.1 N.D. -1.2
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins +0.1 +0.0 -0.0 N.D. -1.2
stress Zinc 1.25 mM +0.1 -0.0 -0.4 N.D. -0.7
stress Doxycycline hyclate 0.0001 mg/ml +0.1 +0.0 -0.3 N.D. -0.8
carbon source casaminos (C) -0.0 +0.1 -0.2 N.D. -0.9
motility inner cut, LB soft agar motility assay -0.2 +0.1 +0.1 N.D. -1.1
stress Paraquat dichloride 0.045 mg/ml +0.1 -0.1 +0.1 N.D. -1.1
nitrogen source L-Proline (N) -0.0 +0.2 +0.1 N.D. -1.3
stress Thallium(I) acetate 0.01 mg/ml +0.0 +0.1 -0.1 N.D. -1.0
nutrient D-Cellobiose (C); no added vitamins +0.3 +0.1 -0.2 N.D. -1.0
stress Thallium(I) acetate 0.005 mg/ml +0.0 +0.1 +0.0 N.D. -1.0
nutrient D-Glucose (C); no added vitamins +0.3 -0.0 -0.0 N.D. -1.1
nutrient D-Cellobiose (C); no added vitamins +0.2 +0.0 -0.2 N.D. -0.8
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins +0.2 -0.0 +0.4 N.D. -1.0
carbon source L-Glutamic (C) +0.1 +0.1 +0.1 N.D. -0.8
motility outer cut, LB soft agar motility assay +0.0 -0.0 +0.9 N.D. -1.3
motility inner cut, LB soft agar motility assay +0.1 -0.1 +0.5 N.D. -0.4
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