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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_0886 and Ga0059261_0887 are separated by 66 nucleotides
Ga0059261_0887 and Ga0059261_0888 overlap by 4 nucleotides
Ga0059261_0888 and Ga0059261_0889 are separated by 350 nucleotides
Ga0059261_0889 and Ga0059261_0890 are separated by 64 nucleotides
Ga0059261_0886: Ga0059261_0886 - Arabinose efflux permease, at 927,273 to 928,454
_0886
Ga0059261_0887: Ga0059261_0887 - Predicted transcriptional regulators, at 928,521 to 928,853
_0887
Ga0059261_0888: Ga0059261_0888 - Uncharacterized conserved protein, at 928,850 to 929,320
_0888
Ga0059261_0889: Ga0059261_0889 - Cold shock proteins, at 929,671 to 929,877
_0889
Ga0059261_0890: Ga0059261_0890 - hypothetical protein, at 929,942 to 930,160
_0890
Group
Condition
Ga0059261
_0886
Ga0059261
_0887
Ga0059261
_0888
Ga0059261
_0889
Ga0059261
_0890
carbon source
L-Glutamine (C)
-0.1
-0.2
-0.0
-1.2
-0.2
carbon source
D-Xylose (C)
+0.1
+0.1
-0.1
-1.0
-0.3
stress
copper (II) chloride 0.75 mM
+0.1
-0.1
-0.1
-1.0
-0.1
carbon source
D-Glucose (C)
+0.1
+0.3
-0.2
-1.1
-0.1
carbon source
D-Xylose (C)
+0.1
+0.3
+0.0
-1.0
-0.3
stress
sodium fluoride 10 mM
+0.2
-0.1
-0.1
-0.7
-0.1
carbon source
casaminos (C)
+0.0
+0.2
-0.1
-0.9
-0.0
stress
Cobalt chloride 0.04 mM
+0.0
+0.4
-0.1
-0.9
-0.2
nutrient
D-Glucose (C) and 0.25mM L-Methionine; no added vitamins
+0.0
+0.2
-0.2
-0.5
-0.4
stress
Tetracycline 0.001 mg/ml
+0.1
-0.0
+0.1
-0.7
-0.3
pH
LB, pH8
-0.0
-0.4
+0.1
-0.6
+0.2
stress
Cisplatin 0.025 mg/ml
+0.1
+0.2
-0.2
-0.7
-0.2
stress
A22 0.02 mg/ml
-0.0
+0.4
+0.0
-0.9
-0.2
stress
Thallium(I) acetate 0.01 mg/ml
+0.0
+0.4
-0.1
-0.6
-0.2
motility
outer cut, LB soft agar motility assay
-0.3
+0.8
+0.0
-1.3
+0.2
stress
Chloride 100 mM
+0.1
-0.1
+0.2
-0.7
+0.2
motility
inner cut, LB soft agar motility assay
+0.0
-0.7
+0.2
+0.3
+0.1
nutrient
D-Cellobiose (C); no added vitamins
+0.2
+0.7
+0.1
-0.4
-0.3
motility
outer cut, LB soft agar motility assay
+0.1
-0.4
-0.1
+0.3
+0.6
motility
inner cut, LB soft agar motility assay
-0.4
-0.1
+0.2
+1.2
-0.2
pH
LB, pH6
-0.1
-0.4
-0.0
+1.1
+0.1
motility
inner cut, LB soft agar motility assay
+0.1
+0.2
+0.3
+0.7
-0.6
pH
LB, pH6
-0.0
-0.1
-0.1
+0.9
+0.1
stress
Cholin acetate 10 mM
-0.0
+0.2
-0.2
+0.8
+0.1
stress
Choline chloride 20 mM
+0.0
+0.1
-0.1
+1.0
-0.0
nitrogen source
L-Glutamine (N)
-0.1
+0.4
+0.0
+0.7
-0.1
stress
1-ethyl-3-methylimidazolium lysine 10 mM
+0.0
+0.4
-0.1
+0.7
+0.0
nitrogen source
L-Proline (N)
+0.0
+0.7
+0.1
+0.4
-0.2
nitrogen source
L-Proline (N)
+0.1
+0.7
+0.1
+0.7
-0.1
temperature
LB 20C
-0.0
+0.6
+0.1
+0.9
+0.1
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