Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_0877 and Ga0059261_0878 are separated by 3 nucleotidesGa0059261_0878 and Ga0059261_0879 overlap by 4 nucleotidesGa0059261_0879 and Ga0059261_0880 are separated by 47 nucleotidesGa0059261_0880 and Ga0059261_0881 are separated by 32 nucleotides Ga0059261_0877: Ga0059261_0877 - Parvulin-like peptidyl-prolyl isomerase, at 918,076 to 919,428 _0877 Ga0059261_0878: Ga0059261_0878 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 919,432 to 920,436 _0878 Ga0059261_0879: Ga0059261_0879 - ribosomal RNA small subunit methyltransferase A, at 920,433 to 921,251 _0879 Ga0059261_0880: Ga0059261_0880 - Tetratricopeptide repeat, at 921,299 to 921,805 _0880 Ga0059261_0881: Ga0059261_0881 - tRNA and rRNA cytosine-C5-methylases, at 921,838 to 923,022 _0881
Group Condition Ga0059261_0877 Ga0059261_0878 Ga0059261_0879 Ga0059261_0880 Ga0059261_0881
stress Fusidic 0.0005 mg/ml N.D. N.D. -1.5 -1.1 +0.1
stress Sisomicin 0.12 mg/ml N.D. N.D. -1.9 -0.5 +0.1
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins N.D. N.D. +0.4 -1.9 -0.2
carbon source L-Glutamic (C) N.D. N.D. -0.3 -1.1 -0.3
nutrient L-Glutamic (C); no added vitamins N.D. N.D. -0.4 -1.1 -0.1
carbon source D-Cellobiose (C) N.D. N.D. +0.3 -1.6 -0.2
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins N.D. N.D. -0.2 -1.2 -0.2
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins N.D. N.D. -0.1 -1.1 -0.3
carbon source D-Cellobiose (C) N.D. N.D. +0.2 -1.4 -0.1
carbon source NAG (C) N.D. N.D. +0.7 -1.9 -0.0
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins N.D. N.D. +0.7 -1.9 -0.1
stress Gentamicin 0.015 mg/ml N.D. N.D. -1.2 -0.1 +0.1
nitrogen source L-Alanine (N) N.D. N.D. +1.3 -2.1 -0.2
carbon source NAG (C) N.D. N.D. +0.9 -1.9 +0.0
carbon source a-Cyclodextrin (C) N.D. N.D. +1.3 -2.1 -0.2
motility inner cut, LB soft agar motility assay N.D. N.D. +0.3 -0.7 -0.5
carbon source D-Glucose (C) N.D. N.D. +0.2 -1.2 +0.0
carbon source D-Fructose (C) N.D. N.D. +0.6 -1.2 -0.3
nutrient D-Cellobiose (C); no added vitamins N.D. N.D. +0.7 -1.3 -0.2
carbon source D-Maltose (C) N.D. N.D. +1.0 -1.5 -0.2
carbon source D-Maltose (C) N.D. N.D. +1.1 -1.7 -0.1
carbon source a-Cyclodextrin (C) N.D. N.D. +1.3 -1.8 -0.1
nutrient D-Cellobiose (C); no added vitamins N.D. N.D. +1.0 -1.3 -0.1
carbon source D-Raffinose (C) N.D. N.D. +0.7 -1.0 +0.0
stress Polymyxin B sulfate 0.1 mg/ml N.D. N.D. -0.9 +0.6 +0.0
carbon source D-Raffinose (C) N.D. N.D. +0.7 -0.8 -0.1
nitrogen source L-Histidine (N) N.D. N.D. +1.5 -1.4 -0.1
stress Phosphomycin 0.005 mg/ml N.D. N.D. +1.1 +0.1 -0.3
nitrogen source L-Proline (N) N.D. N.D. +1.3 -0.1 -0.3
nitrogen source L-Glutamine (N) N.D. N.D. +1.3 +0.6 -0.2
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