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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_0815 and Ga0059261_0816 are separated by 161 nucleotides
Ga0059261_0816 and Ga0059261_0817 are separated by 43 nucleotides
Ga0059261_0817 and Ga0059261_0818 are separated by 184 nucleotides
Ga0059261_0818 and Ga0059261_0819 are separated by 78 nucleotides
Ga0059261_0815: Ga0059261_0815 - Uncharacterized protein involved in tellurite resistance, at 856,639 to 857,847
_0815
Ga0059261_0816: Ga0059261_0816 - hypothetical protein, at 858,009 to 858,179
_0816
Ga0059261_0817: Ga0059261_0817 - GTP-binding protein TypA/BipA, at 858,223 to 860,037
_0817
Ga0059261_0818: Ga0059261_0818 - OmpA family, at 860,222 to 861,109
_0818
Ga0059261_0819: Ga0059261_0819 - Holliday junction DNA helicase subunit RuvB, at 861,188 to 862,216
_0819
Group
Condition
Ga0059261
_0815
Ga0059261
_0816
Ga0059261
_0817
Ga0059261
_0818
Ga0059261
_0819
temperature
LB 20C
-0.2
-0.3
-1.3
-0.4
N.D.
motility
outer cut, LB soft agar motility assay
-0.1
-0.2
-1.2
-0.7
N.D.
motility
inner cut, LB soft agar motility assay
-0.1
-1.3
-0.9
+0.2
N.D.
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
-1.1
-0.0
-0.7
+0.1
N.D.
motility
inner cut, LB soft agar motility assay
-0.1
-1.4
-0.6
+0.5
N.D.
nutrient
L-Glutamic (C); no added vitamins
-0.4
-0.6
-0.6
+0.2
N.D.
motility
outer cut, LB soft agar motility assay
-0.1
-0.3
-0.7
-0.3
N.D.
motility
inner cut, LB soft agar motility assay
+0.1
-1.6
+0.1
+0.0
N.D.
nutrient
L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins
-0.2
-0.3
-0.7
-0.1
N.D.
motility
inner cut, LB soft agar motility assay
+0.0
-0.9
-0.4
-0.1
N.D.
carbon source
D-Xylose (C)
-0.1
+0.2
-1.0
-0.3
N.D.
temperature
LB 20C
-0.3
+0.1
-0.7
-0.4
N.D.
nutrient
D-Cellobiose (C); no added vitamins
-1.2
+0.0
-0.3
+0.3
N.D.
carbon source
D-Cellobiose (C)
-0.2
-0.2
-0.8
+0.1
N.D.
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
-0.8
+0.1
-0.4
+0.1
N.D.
carbon source
D-Glucose (C)
-0.1
-0.5
-0.6
+0.2
N.D.
stress
Bacitracin 0.12 mg/ml
-1.2
+0.2
-0.1
+0.1
N.D.
stress
copper (II) chloride 0.75 mM
-1.0
+0.2
-0.2
+0.0
N.D.
stress
L-Lysine 50 mM
-0.8
-0.4
+0.2
+0.0
N.D.
temperature
LB 37C
-0.2
-0.4
-0.6
+0.3
N.D.
stress
Chloramphenicol 0.0025 mg/ml
-0.1
+0.2
-0.9
-0.1
N.D.
carbon source
NAG (C)
-0.2
+0.6
-0.9
+0.1
N.D.
nutrient
D-Cellobiose (C); no added vitamins
-1.2
+0.8
-0.2
+0.3
N.D.
nutrient
D-Glucose (C); no added vitamins
-1.0
+0.5
+0.1
+0.2
N.D.
stress
A22 0.02 mg/ml
-0.9
+0.1
+1.0
-0.1
N.D.
stress
Paraquat dichloride 0.045 mg/ml
-0.2
-0.4
+0.7
+0.2
N.D.
stress
Nickel (II) chloride 1.5 mM
-0.2
+0.3
+0.7
+0.2
N.D.
nitrogen source
L-Glutamine (N)
-0.1
+0.6
+1.3
-0.7
N.D.
nitrogen source
L-Proline (N)
-0.3
+0.7
+1.9
-0.3
N.D.
nitrogen source
L-Proline (N)
-0.3
+1.0
+2.6
-0.3
N.D.
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