Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_0758 and Ga0059261_0759 are separated by 44 nucleotidesGa0059261_0759 and Ga0059261_0760 are separated by 10 nucleotidesGa0059261_0760 and Ga0059261_0761 are separated by 2 nucleotidesGa0059261_0761 and Ga0059261_0762 are separated by 139 nucleotides Ga0059261_0758: Ga0059261_0758 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 784,039 to 785,360 _0758 Ga0059261_0759: Ga0059261_0759 - Beta-lactamase class C and other penicillin binding proteins, at 785,405 to 786,868 _0759 Ga0059261_0760: Ga0059261_0760 - Uncharacterized protein conserved in bacteria, at 786,879 to 787,226 _0760 Ga0059261_0761: Ga0059261_0761 - hypothetical protein, at 787,229 to 788,089 _0761 Ga0059261_0762: Ga0059261_0762 - tRNA, at 788,229 to 788,304 _0762
Group Condition Ga0059261_0758 Ga0059261_0759 Ga0059261_0760 Ga0059261_0761 Ga0059261_0762
stress methylglyoxal 0.005 vol% -1.4 +0.1 +0.1 +0.1 N.D.
stress methylglyoxal 0.001 vol% -1.0 +0.0 -0.0 +0.0 N.D.
nutrient D-Cellobiose (C); no added vitamins -0.0 +0.1 -0.0 -0.3 N.D.
motility inner cut, LB soft agar motility assay -0.5 +0.0 -0.3 +0.5 N.D.
stress Cephalothin 0.3 mg/ml -0.3 +0.0 +0.2 +0.0 N.D.
carbon source D-Raffinose (C) +0.1 +0.1 -0.1 -0.1 N.D.
motility outer cut, LB soft agar motility assay -0.2 +0.1 -0.0 +0.2 N.D.
stress Phosphomycin 0.005 mg/ml -0.1 +0.1 -0.1 +0.2 N.D.
stress 1-ethyl-3-methylimidazolium acetate 20 mM +0.0 +0.1 +0.2 -0.2 N.D.
stress Tetracycline 0.001 mg/ml +0.2 -0.0 +0.1 -0.2 N.D.
motility inner cut, LB soft agar motility assay -0.1 -0.1 +0.6 -0.2 N.D.
stress Vanillin 0.25 mM -0.1 +0.0 +0.2 +0.1 N.D.
carbon source a-Cyclodextrin (C) +0.2 +0.1 -0.1 +0.0 N.D.
stress Lomefloxacin 0.01 mM -0.0 +0.0 +0.3 +0.1 N.D.
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins +0.0 +0.2 -0.0 +0.2 N.D.
carbon source D-Maltose (C) +0.1 +0.1 +0.2 +0.0 N.D.
stress Chloramphenicol 0.001 mg/ml +0.1 +0.1 +0.1 +0.2 N.D.
nitrogen source L-Proline (N) +0.1 +0.0 +0.4 -0.1 N.D.
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins +0.1 +0.2 +0.2 -0.0 N.D.
nitrogen source L-Alanine (N) +0.2 +0.1 +0.1 +0.0 N.D.
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins +0.1 -0.0 +0.2 +0.2 N.D.
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.0 +0.2 +0.2 +0.1 N.D.
carbon source NAG (C) +0.1 +0.1 +0.1 +0.2 N.D.
nutrient D-Glucose (C); no added vitamins +0.1 +0.2 +0.2 +0.1 N.D.
carbon source D-Glucose (C) +0.1 +0.1 +0.2 +0.2 N.D.
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins +0.1 +0.2 +0.1 +0.3 N.D.
nutrient D-Glucose (C); no added vitamins +0.1 +0.2 +0.5 +0.2 N.D.
motility outer cut, LB soft agar motility assay -0.2 -0.2 +1.2 +0.2 N.D.
motility inner cut, LB soft agar motility assay -0.1 +0.3 +1.0 +0.0 N.D.
motility inner cut, LB soft agar motility assay +0.2 +0.1 +0.9 +0.2 N.D.
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