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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_0718 and Ga0059261_0719 overlap by 4 nucleotides
Ga0059261_0719 and Ga0059261_0720 are separated by 58 nucleotides
Ga0059261_0720 and Ga0059261_0721 are separated by 19 nucleotides
Ga0059261_0721 and Ga0059261_0722 are separated by 99 nucleotides
Ga0059261_0718: Ga0059261_0718 - Peptidase family M23, at 752,190 to 752,768
_0718
Ga0059261_0719: Ga0059261_0719 - Uncharacterized protein conserved in bacteria, at 752,765 to 753,802
_0719
Ga0059261_0720: Ga0059261_0720 - Predicted small integral membrane protein, at 753,861 to 754,268
_0720
Ga0059261_0721: Ga0059261_0721 - thiamine-phosphate diphosphorylase, at 754,288 to 754,977
_0721
Ga0059261_0722: Ga0059261_0722 - L-aminopeptidase/D-esterase, at 755,077 to 756,216
_0722
Group
Condition
Ga0059261
_0718
Ga0059261
_0719
Ga0059261
_0720
Ga0059261
_0721
Ga0059261
_0722
carbon source
D-Maltose (C)
+0.0
-2.2
-0.4
N.D.
+0.1
carbon source
a-Cyclodextrin (C)
+0.0
-1.6
-0.4
N.D.
+0.0
carbon source
a-Cyclodextrin (C)
+0.1
-1.8
-0.1
N.D.
+0.1
carbon source
D-Fructose (C)
+0.0
-1.2
-0.4
N.D.
-0.1
carbon source
D-Maltose (C)
+0.0
-1.7
-0.0
N.D.
+0.2
stress
Sisomicin 0.12 mg/ml
+0.1
-1.1
-0.4
N.D.
-0.1
carbon source
NAG (C)
-0.0
-1.1
-0.3
N.D.
+0.1
motility
inner cut, LB soft agar motility assay
+0.1
-0.1
-1.2
N.D.
-0.1
carbon source
D-Glucose (C)
+0.1
-1.1
-0.3
N.D.
+0.0
nutrient
D-Cellobiose (C); no added vitamins
+0.1
-0.5
-0.5
N.D.
-0.2
carbon source
NAG (C)
+0.1
-1.1
-0.1
N.D.
-0.1
nitrogen source
L-Alanine (N)
+0.0
-1.1
-0.0
N.D.
+0.0
stress
nitrate 100 mM
+0.1
-0.7
-0.2
N.D.
-0.2
stress
Chloride 200 mM
+0.1
-0.7
-0.4
N.D.
+0.0
stress
perchlorate 50 mM
+0.1
-0.9
-0.4
N.D.
+0.2
stress
Gentamicin 0.015 mg/ml
-0.1
-0.7
+0.3
N.D.
-0.3
motility
inner cut, LB soft agar motility assay
+0.1
-0.9
+0.6
N.D.
-0.5
temperature
LB 20C
+0.0
-0.8
-0.1
N.D.
+0.2
motility
inner cut, LB soft agar motility assay
-0.2
-1.7
+0.8
N.D.
+0.5
stress
Chloramphenicol 0.0005 mg/ml
+0.1
-0.5
+0.2
N.D.
-0.3
stress
Cephalothin 0.3 mg/ml
-0.1
-0.8
+0.6
N.D.
-0.0
stress
Rifampicin 0.001 mg/ml
+0.0
-0.7
+0.4
N.D.
-0.1
motility
outer cut, LB soft agar motility assay
+0.0
-0.4
-0.7
N.D.
+0.8
nutrient
D-Cellobiose (C); no added vitamins
+0.1
-1.2
+0.9
N.D.
+0.1
pH
LB, pH6
-0.1
-0.7
+0.6
N.D.
+0.2
nutrient
D-Glucose (C); no added vitamins
-0.1
-0.4
+0.6
N.D.
-0.0
motility
inner cut, LB soft agar motility assay
-0.2
-0.3
+0.7
N.D.
+0.2
pH
LB, pH8
-0.0
-0.4
+0.5
N.D.
+0.3
pH
LB, pH7
+0.0
-0.4
+0.7
N.D.
+0.2
motility
outer cut, LB soft agar motility assay
+0.1
+1.3
+0.7
N.D.
-0.9
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