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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_0650 and Ga0059261_0651 are separated by 107 nucleotides
Ga0059261_0651 and Ga0059261_0652 overlap by 1 nucleotides
Ga0059261_0652 and Ga0059261_0653 are separated by 11 nucleotides
Ga0059261_0653 and Ga0059261_0654 are separated by 76 nucleotides
Ga0059261_0650: Ga0059261_0650 - Negative regulator of beta-lactamase expression, at 690,795 to 691,502
_0650
Ga0059261_0651: Ga0059261_0651 - Methylase of chemotaxis methyl-accepting proteins, at 691,610 to 692,467
_0651
Ga0059261_0652: Ga0059261_0652 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 692,467 to 693,528
_0652
Ga0059261_0653: Ga0059261_0653 - Response regulator receiver domain, at 693,540 to 693,905
_0653
Ga0059261_0654: Ga0059261_0654 - Chemotaxis signal transduction protein, at 693,982 to 694,413
_0654
Group
Condition
Ga0059261
_0650
Ga0059261
_0651
Ga0059261
_0652
Ga0059261
_0653
Ga0059261
_0654
nutrient
D-Glucose (C); no added vitamins
-3.1
-0.5
+0.1
-0.6
-1.4
carbon source
D-Fructose (C)
-4.7
-0.2
+0.1
-0.2
-0.3
nutrient
D-Cellobiose (C); no added vitamins
-4.3
-0.2
+0.2
-0.6
-0.3
nitrogen source
L-Histidine (N)
-1.7
-0.8
+0.2
-1.2
-1.4
carbon source
L-Glutamine (C)
-2.2
-0.7
+0.0
-0.8
-1.0
nutrient
D-Cellobiose (C); no added vitamins
-2.5
-0.3
+0.3
-0.9
-0.9
carbon source
D-Glucose (C)
-4.6
-0.0
+0.1
-0.1
+0.3
nitrogen source
L-Glutamic (N)
-2.0
-0.8
+0.1
-0.7
-0.7
nitrogen source
L-Glutamic (N)
-2.0
-0.7
+0.0
-0.5
-0.6
carbon source
NAG (C)
-2.8
-0.3
+0.1
-0.4
-0.3
nutrient
L-Glutamic (C); no added vitamins
-2.8
-0.1
+0.1
-0.4
-0.5
temperature
LB 20C
-3.6
+0.2
-0.1
+0.0
-0.2
carbon source
D-Maltose (C)
-1.6
-0.7
-0.1
-0.7
-0.4
nitrogen source
L-Alanine (N)
-2.7
-0.1
+0.0
-0.4
-0.3
carbon source
D-Maltose (C)
-2.5
-0.3
+0.0
-0.3
-0.3
stress
copper (II) chloride 0.75 mM
-2.7
-0.3
-0.0
-0.3
+0.1
nutrient
L-Glutamic (C); no added vitamins
-2.3
-0.4
+0.2
-0.4
-0.3
stress
Phosphomycin 0.005 mg/ml
-2.6
-0.1
-0.1
-0.1
-0.1
nitrogen source
L-Glutamine (N)
-3.4
+0.0
-0.2
+0.1
+0.6
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
-1.8
-0.2
+0.0
-0.4
-0.5
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
-2.0
-0.2
+0.3
-0.3
-0.5
carbon source
NAG (C)
-2.1
-0.2
-0.1
-0.2
-0.1
motility
inner cut, LB soft agar motility assay
-2.7
-0.2
-0.3
-0.3
+0.9
carbon source
D-Raffinose (C)
-1.5
-0.4
+0.0
-0.2
-0.4
nitrogen source
L-Glutamine (N)
-2.4
-0.1
-0.0
+0.1
+0.2
nitrogen source
L-Proline (N)
-2.3
+0.1
-0.1
+0.2
+0.4
motility
outer cut, LB soft agar motility assay
-0.9
+0.2
-0.1
+0.7
-0.8
motility
inner cut, LB soft agar motility assay
-1.5
-0.2
-0.1
+0.8
+0.8
motility
inner cut, LB soft agar motility assay
-1.6
+0.9
-0.4
+0.9
+1.2
motility
inner cut, LB soft agar motility assay
-0.7
+0.9
-0.2
+1.1
+1.4
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