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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_0622 and Ga0059261_0623 are separated by 50 nucleotides
Ga0059261_0623 and Ga0059261_0624 overlap by 7 nucleotides
Ga0059261_0624 and Ga0059261_0625 overlap by 1 nucleotides
Ga0059261_0625 and Ga0059261_0626 overlap by 4 nucleotides
Ga0059261_0622: Ga0059261_0622 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 662,484 to 663,323
_0622
Ga0059261_0623: Ga0059261_0623 - ABC-type Fe3+-siderophore transport system, permease component, at 663,374 to 664,369
_0623
Ga0059261_0624: Ga0059261_0624 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 664,363 to 665,151
_0624
Ga0059261_0625: Ga0059261_0625 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 665,151 to 666,164
_0625
Ga0059261_0626: Ga0059261_0626 - Fructose-2,6-bisphosphatase, at 666,161 to 666,730
_0626
Group
Condition
Ga0059261
_0622
Ga0059261
_0623
Ga0059261
_0624
Ga0059261
_0625
Ga0059261
_0626
carbon source
a-Cyclodextrin (C)
-4.6
-4.1
-4.1
-0.6
-0.1
carbon source
a-Cyclodextrin (C)
-4.1
-3.5
-3.8
-0.1
-0.0
carbon source
D-Raffinose (C)
-3.8
-3.0
-3.7
-0.1
-0.1
carbon source
L-Glutamine (C)
-3.9
-2.6
-3.0
+0.0
-0.1
carbon source
NAG (C)
-3.0
-3.3
-1.9
-0.3
-0.1
carbon source
NAG (C)
-3.0
-2.0
-2.2
-0.4
-0.3
carbon source
L-Glutamine (C)
-2.5
-2.3
-2.0
-0.4
-0.3
carbon source
NAG (C)
-2.7
-1.9
-2.1
-0.1
-0.3
carbon source
NAG (C)
-2.5
-2.1
-2.1
-0.1
-0.2
carbon source
D-Cellobiose (C)
-2.2
-2.7
-1.6
-0.2
-0.2
carbon source
D-Maltose (C)
-1.7
-2.1
-2.4
-0.3
+0.1
nitrogen source
L-Glutamine (N)
-1.8
-2.1
-1.9
-0.3
-0.1
carbon source
D-Glucose (C)
-1.9
-2.5
-1.4
-0.1
-0.3
carbon source
D-Glucose (C)
-2.5
-1.9
-1.5
+0.0
-0.2
carbon source
D-Raffinose (C)
-2.2
-1.5
-2.0
-0.2
-0.0
carbon source
D-Maltose (C)
-1.8
-2.1
-1.7
-0.0
-0.2
carbon source
D-Cellobiose (C)
-1.9
-1.8
-1.7
-0.2
+0.3
carbon source
D-Fructose (C)
-1.6
-1.3
-1.5
-0.3
-0.1
nitrogen source
L-Histidine (N)
-1.7
-1.4
-1.5
-0.2
+0.0
carbon source
D-Cellobiose (C)
-1.6
-1.7
-1.4
+0.3
-0.2
nitrogen source
L-Alanine (N)
-1.5
-1.7
-1.6
-0.1
+0.4
motility
inner cut, LB soft agar motility assay
-1.8
-2.2
-0.8
+0.3
-0.0
carbon source
D-Cellobiose (C)
-1.4
-1.4
-1.2
+0.1
-0.2
nutrient
D-Cellobiose (C); no added vitamins
-1.0
-1.5
-1.0
-0.3
-0.3
nutrient
D-Cellobiose (C); no added vitamins
-0.9
-1.2
-1.4
-0.5
-0.1
nitrogen source
L-Proline (N)
-1.3
-1.4
-0.7
-0.1
-0.5
stress
Phosphomycin 0.005 mg/ml
-1.4
-1.4
-1.3
+0.3
+0.1
nitrogen source
L-Glutamic (N)
-1.1
-1.2
-0.9
-0.2
-0.4
motility
outer cut, LB soft agar motility assay
-0.9
-0.9
-1.3
-0.0
-0.6
nitrogen source
L-Proline (N)
-1.0
-1.3
-1.3
-0.3
+0.2
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