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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingomonas koreensis DSMZ 15582
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Ga0059261_0270 and Ga0059261_0271 are separated by 85 nucleotides
Ga0059261_0271 and Ga0059261_0272 are separated by 150 nucleotides
Ga0059261_0272 and Ga0059261_0273 are separated by 105 nucleotides
Ga0059261_0273 and Ga0059261_0274 are separated by 94 nucleotides
Ga0059261_0270: Ga0059261_0270 - Uncharacterized protein conserved in bacteria, at 258,097 to 258,561
_0270
Ga0059261_0271: Ga0059261_0271 - Uncharacterized conserved small protein containing a coiled-coil domain, at 258,647 to 258,844
_0271
Ga0059261_0272: Ga0059261_0272 - Uncharacterized small protein, at 258,995 to 259,150
_0272
Ga0059261_0273: Ga0059261_0273 - PilZ domain, at 259,256 to 259,657
_0273
Ga0059261_0274: Ga0059261_0274 - transcriptional regulator, TraR/DksA family, at 259,752 to 260,216
_0274
Group
Condition
Ga0059261
_0270
Ga0059261
_0271
Ga0059261
_0272
Ga0059261
_0273
Ga0059261
_0274
nutrient
D-Cellobiose (C); no added vitamins
+0.0
N.D.
+0.2
+0.0
-7.2
nitrogen source
L-Histidine (N)
-0.7
N.D.
+0.2
-0.3
-5.9
carbon source
NAG (C)
+0.1
N.D.
-0.1
-0.0
-6.1
carbon source
D-Raffinose (C)
+0.2
N.D.
+0.1
-0.1
-6.0
carbon source
D-Maltose (C)
+0.0
N.D.
-0.7
-0.2
-4.9
nutrient
L-Glutamic (C); no added vitamins
-0.0
N.D.
-0.3
+0.1
-5.5
carbon source
a-Cyclodextrin (C)
+0.2
N.D.
-0.3
-0.2
-5.4
carbon source
D-Raffinose (C)
+0.1
N.D.
-0.2
+0.0
-5.5
carbon source
NAG (C)
-0.0
N.D.
-0.3
-0.2
-5.0
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
+0.3
N.D.
+0.3
+0.2
-6.1
carbon source
D-Fructose (C)
+0.2
N.D.
-0.4
-0.2
-4.9
nitrogen source
L-Alanine (N)
+0.1
N.D.
+0.6
-0.3
-5.5
nitrogen source
L-Glutamic (N)
-0.2
N.D.
-0.0
-0.1
-4.8
nitrogen source
L-Glutamine (N)
+0.3
N.D.
-0.6
+0.0
-4.8
carbon source
D-Maltose (C)
-0.3
N.D.
-0.5
-0.2
-4.0
nutrient
D-Glucose (C); no added vitamins
-0.2
N.D.
+0.5
-0.4
-4.9
carbon source
a-Cyclodextrin (C)
+0.3
N.D.
-0.2
-0.1
-5.0
carbon source
NAG (C)
-0.1
N.D.
-0.1
+0.0
-4.7
nitrogen source
L-Glutamine (N)
+0.3
N.D.
-0.1
-0.1
-4.8
carbon source
NAG (C)
+0.0
N.D.
-0.2
-0.3
-4.2
nitrogen source
L-Proline (N)
+0.4
N.D.
-0.5
-0.1
-4.2
nutrient
L-Glutamic (C); no added vitamins
-0.1
N.D.
-0.4
+0.1
-4.1
carbon source
D-Glucose (C)
+0.1
N.D.
-0.0
-0.1
-4.3
nitrogen source
L-Proline (N)
+0.3
N.D.
-0.5
+0.0
-4.1
nitrogen source
L-Glutamic (N)
-0.3
N.D.
+0.1
-0.0
-4.0
carbon source
D-Glucose (C)
-0.0
N.D.
-0.1
+0.0
-4.2
nutrient
D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins
+0.1
N.D.
+0.4
+0.2
-4.1
carbon source
D-Cellobiose (C)
+0.3
N.D.
+0.6
+0.2
-4.4
carbon source
D-Cellobiose (C)
+0.2
N.D.
+0.4
+0.3
-4.1
nutrient
D-Glucose (C); no added vitamins
+0.0
N.D.
+0.9
-0.0
-4.0
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