Fitness for 5 genes in Sphingomonas koreensis DSMZ 15582

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500 ntGa0059261_0089 and Ga0059261_0090 are separated by 136 nucleotidesGa0059261_0090 and Ga0059261_0091 are separated by 71 nucleotidesGa0059261_0091 and Ga0059261_0092 are separated by 135 nucleotidesGa0059261_0092 and Ga0059261_0093 overlap by 4 nucleotides Ga0059261_0089: Ga0059261_0089 - trigger factor, at 80,556 to 82,166 _0089 Ga0059261_0090: Ga0059261_0090 - Glycosyltransferases involved in cell wall biogenesis, at 82,303 to 83,232 _0090 Ga0059261_0091: Ga0059261_0091 - Outer membrane protein V, at 83,304 to 84,134 _0091 Ga0059261_0092: Ga0059261_0092 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 84,270 to 85,004 _0092 Ga0059261_0093: Ga0059261_0093 - Signal transduction histidine kinase, at 85,001 to 86,413 _0093
Group Condition Ga0059261_0089 Ga0059261_0090 Ga0059261_0091 Ga0059261_0092 Ga0059261_0093
nutrient D-Cellobiose (C); no added vitamins -4.9 N.D. +0.0 +0.2 +0.1
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins -4.0 N.D. +0.1 +0.1 -0.0
nutrient D-Cellobiose (C); no added vitamins -3.8 N.D. +0.0 +0.2 +0.1
nitrogen source L-Glutamine (N) -3.1 N.D. -0.1 +0.0 -0.1
nutrient D-Glucose (C); no added vitamins -3.3 N.D. +0.2 -0.1 +0.1
nutrient D-Cellobiose (C) and 0.25mM L-Methionine; no added vitamins -3.2 N.D. +0.2 +0.0 +0.1
nutrient D-Glucose (C); no added vitamins -3.1 N.D. +0.2 -0.0 +0.2
stress Rifampicin 0.001 mg/ml -2.5 N.D. -0.0 -0.0 +0.1
nitrogen source L-Proline (N) -2.2 N.D. +0.0 -0.0 -0.1
carbon source NAG (C) -2.1 N.D. -0.1 +0.1 -0.1
nutrient L-Glutamic (C); no added vitamins -2.6 N.D. +0.1 +0.2 +0.1
nutrient L-Glutamic (C); no added vitamins -2.5 N.D. +0.1 +0.1 +0.1
nitrogen source L-Glutamine (N) -2.1 N.D. +0.1 -0.1 -0.1
nitrogen source L-Glutamic (N) -2.1 N.D. +0.1 -0.2 +0.0
nitrogen source L-Glutamic (N) -1.8 N.D. +0.0 -0.1 -0.1
carbon source NAG (C) -1.8 N.D. -0.0 +0.1 -0.1
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins -1.9 N.D. +0.1 +0.1 -0.0
carbon source NAG (C) -1.7 N.D. +0.0 +0.1 -0.2
nitrogen source L-Proline (N) -1.8 N.D. +0.2 -0.1 +0.0
nitrogen source L-Alanine (N) -1.5 N.D. +0.1 -0.1 -0.1
temperature LB 37C -1.6 N.D. +0.2 -0.1 +0.1
temperature LB 37C -1.6 N.D. +0.0 +0.0 +0.1
carbon source D-Cellobiose (C) -1.8 N.D. +0.2 +0.2 +0.1
nutrient L-Glutamic (C) and 0.25mM L-Methionine; no added vitamins -1.6 N.D. +0.1 +0.1 +0.1
motility inner cut, LB soft agar motility assay -1.6 N.D. -0.0 +0.3 +0.2
motility outer cut, LB soft agar motility assay -1.3 N.D. +0.0 -0.6 +0.8
motility outer cut, LB soft agar motility assay -1.3 N.D. +0.2 -0.1 +0.1
carbon source D-Cellobiose (C) -1.3 N.D. +0.2 +0.1 +0.1
motility inner cut, LB soft agar motility assay -1.3 N.D. +0.5 -0.2 +0.2
nutrient D-Glucose (C) and 0.25mM L-Methionine; no added vitamins -1.4 N.D. +0.1 +0.5 +0.3
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