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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_1026 and Psest_1028 are separated by 205 nucleotides
Psest_1028 and Psest_1029 are separated by 111 nucleotides
Psest_1029 and Psest_1030 are separated by 18 nucleotides
Psest_1030 and Psest_1031 are separated by 71 nucleotides
Psest_1026: Psest_1026 - Uncharacterized iron-regulated protein, at 1,112,376 to 1,113,260
_1026
Psest_1028: Psest_1028 - Cyclic nucleotide-binding domain., at 1,113,466 to 1,114,263
_1028
Psest_1029: Psest_1029 - Regulator of competence-specific genes, at 1,114,375 to 1,114,638
_1029
Psest_1030: Psest_1030 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,114,657 to 1,115,442
_1030
Psest_1031: Psest_1031 - Uncharacterized protein conserved in bacteria, at 1,115,514 to 1,117,076
_1031
Group
Condition
Psest
_1026
Psest
_1028
Psest
_1029
Psest
_1030
Psest
_1031
stress
nitrite 2.5 mM
-0.9
+0.3
-1.1
-0.0
-1.5
carbon source
RCH2 defined media
+0.0
-0.0
-0.9
-0.3
-2.0
stress
sodium fluoride 6.25 mM
+0.4
-0.0
-0.4
+0.0
-3.0
stress
Furfuryl Alcohol 0.05 vol%
-0.4
+0.2
-0.1
-0.5
-2.1
stress
Def Lomefloxacin 0.00004 mM
+0.3
-0.3
-1.0
-0.0
-1.8
lb
LB
-0.9
-0.1
+0.3
-0.1
-1.9
stress
Cobalt chloride 0.06 mM
-0.3
+0.1
+0.1
+0.3
-2.8
RCH2 grown on a colony of N2C3
-1.8
-0.0
+1.0
+0.1
-1.5
stress
Cisplatin 0.003 mg/ml
-1.2
+0.4
-0.9
+0.1
-0.6
carbon source
L-tyrosine (C)
+0.2
-0.5
-0.3
+0.4
-1.8
lb
LB
+0.5
-0.2
-0.6
+0.0
-1.6
stress
Chlorite 0.06 mM
-0.3
+0.3
+0.7
+0.1
-2.6
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.4
-0.4
+0.4
+0.1
-2.2
stress
Def Cephalothin 0.04 mg/ml
+0.8
+0.1
-0.6
+0.4
-2.2
lb
LB
+0.5
+0.2
-0.2
-0.0
-2.1
stress
Paraquat dichloride 0.015 mg/ml
+1.1
+0.0
-0.1
-0.3
-2.3
stress
nitrate 250 mM
+0.3
-0.8
+0.4
-0.3
-1.1
stress
Cobalt chloride 0.05 mM
-1.3
-0.2
+0.2
-0.7
+0.6
stress
Nickel (II) chloride 0.8 mM
+0.6
-0.0
+0.2
+0.1
-2.2
stress
2-Furfuraldehyde 0.05 vol%
-1.1
+0.1
+0.5
+0.3
-0.9
lb
LB
+0.5
+0.1
+0.4
+0.0
-2.1
stress
nitrite 2.5 mM
+0.5
-0.1
+0.4
+0.4
-1.7
stress
Cobalt chloride 0.08 mM
-1.5
+0.3
+0.8
-0.0
+0.2
temperature
LB 30C timecourse2 timepoint 2
+0.5
+0.5
-1.3
+0.3
+0.3
carbon source
propionate (C)
-0.7
-0.3
-0.9
+0.8
+1.8
stress
Nalidixic 0.00390625 mg/ml
-1.2
+0.3
+1.3
+0.2
+0.6
stress
1-ethyl-3-methylimidazolium acetate 40 mM
+0.5
-0.0
+1.0
-0.2
+1.3
stress
Def Carbenicillin 0.008 mg/ml
+0.4
-0.6
+1.3
+0.4
+1.1
stress
Choline chloride 90 mM
+0.2
+0.5
+0.1
+0.2
+2.0
stress
A22 0.005 mg/ml
+0.3
-0.2
-0.2
+0.0
+4.5
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