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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_1005 and Psest_1006 are separated by 263 nucleotides
Psest_1006 and Psest_1007 are separated by 115 nucleotides
Psest_1007 and Psest_1008 are separated by 41 nucleotides
Psest_1008 and Psest_1009 are separated by 74 nucleotides
Psest_1005: Psest_1005 - sugar fermentation stimulation protein, at 1,090,107 to 1,090,814
_1005
Psest_1006: Psest_1006 - dTDP-4-dehydrorhamnose reductase, at 1,091,078 to 1,091,998
_1006
Psest_1007: Psest_1007 - Predicted permeases, at 1,092,114 to 1,093,013
_1007
Psest_1008: Psest_1008 - hypothetical protein, at 1,093,055 to 1,093,216
_1008
Psest_1009: Psest_1009 - hypothetical protein, at 1,093,291 to 1,094,049
_1009
Group
Condition
Psest
_1005
Psest
_1006
Psest
_1007
Psest
_1008
Psest
_1009
RCH2 grown on a colony of 8R2A
+0.1
-0.3
+0.0
-4.9
N.D.
RCH2 grown on a colony of Serratia
-1.0
-0.4
+0.2
-3.6
N.D.
stress
Chlorate 75 mM
+0.1
+0.3
+0.1
-3.9
N.D.
carbon source
casaminos (C)
+0.2
-0.3
-0.0
-2.9
N.D.
nitrogen source
L-Citrulline (N)
-0.3
-2.0
-0.0
-0.6
N.D.
nitrogen source
Adenine (N)
-0.3
-0.1
-0.2
-2.3
N.D.
stress
Cisplatin 0.0016 mg/ml
-1.0
-0.0
+0.2
-1.7
N.D.
stress
nitrate 200 mM
-0.5
-0.2
+0.3
-2.2
N.D.
nitrogen source
L-Glutamic (N)
-0.2
-0.4
+0.3
-1.9
N.D.
carbon source
L-tyrosine (C)
+0.8
-1.4
+0.3
-1.9
N.D.
stress
perchlorate 25 mM
-0.5
+0.3
-0.3
-1.7
N.D.
carbon source
propionate (C)
-0.8
+0.2
-0.1
-1.5
N.D.
radiation
Ionizing radiation, 319.06 Gy,
-0.3
-0.6
+0.2
-1.4
N.D.
carbon source
Glycerol (C)
+0.3
-0.2
-0.1
-2.0
N.D.
stress
Vanillin 2 mM
+0.6
-0.4
-0.3
-1.4
N.D.
stress
Benzethonium chloride 0.0125 mM
+0.6
+0.1
-0.3
-1.7
N.D.
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
-0.3
+0.5
-1.6
N.D.
carbon source
L-tyrosine (C)
-0.4
-0.9
+0.6
-0.5
N.D.
stress
Furfuryl Alcohol 0.05 vol%
-0.8
+0.5
+0.2
-1.0
N.D.
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.8
-0.4
+0.1
-1.5
N.D.
stress
D-Cycloserine 0.032 mg/ml
-0.3
+0.2
+0.7
-1.4
N.D.
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.2
+0.5
+0.4
-1.5
N.D.
nitrogen source
L-Citrulline (N)
+0.2
-1.9
-0.0
+1.1
N.D.
stress
Benzethonium chloride 0.01 mM
+0.7
+0.4
-0.5
-1.2
N.D.
RCH2 grown on a colony of N2F3
-0.9
+1.1
-0.4
+1.5
N.D.
RCH2 grown on a colony of N2A2
+0.7
-0.2
-0.2
+1.4
N.D.
stress
Lactate-nitrate; anaerobic; cadmium stress sample3
+0.1
+0.2
+0.0
+2.5
N.D.
stress
Lactate-nitrate; anaerobic; copper stress sample2
-0.1
+0.3
+0.3
+2.8
N.D.
carbon source
propionate (C)
-0.1
+1.2
+0.0
+2.3
N.D.
RCH2 grown on a colony of N2A2
+0.5
-0.4
+0.7
+3.3
N.D.
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