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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0923 and Psest_0925 are separated by 561 nucleotides
Psest_0925 and Psest_0926 are separated by 73 nucleotides
Psest_0926 and Psest_0927 are separated by 111 nucleotides
Psest_0927 and Psest_0928 are separated by 44 nucleotides
Psest_0923: Psest_0923 - Glutaredoxin, GrxC family, at 1,002,821 to 1,003,093
_0923
Psest_0925: Psest_0925 - Uncharacterized conserved protein, at 1,003,655 to 1,003,945
_0925
Psest_0926: Psest_0926 - Transcriptional regulator, at 1,004,019 to 1,004,945
_0926
Psest_0927: Psest_0927 - zinc-binding alcohol dehydrogenase family protein, at 1,005,057 to 1,006,067
_0927
Psest_0928: Psest_0928 - Gluconolactonase, at 1,006,112 to 1,007,293
_0928
Group
Condition
Psest
_0923
Psest
_0925
Psest
_0926
Psest
_0927
Psest
_0928
stress
Furfuryl Alcohol 0.05 vol%
-0.9
-0.7
+0.1
-0.3
-0.2
temperature
LB 30C timecourse1 timepoint 3
-0.2
-0.3
-0.4
-0.4
-0.3
stress
Chlorate 75 mM
+0.4
-0.9
-0.1
-0.4
-0.4
stress
Def Neomycin 0.0008 mg/ml
+0.2
-0.7
-0.3
-0.1
-0.3
nutrient
Min media with glucose
+0.2
-0.9
-0.1
-0.1
-0.2
stress
Doxycycline hyclate 0.0002 mg/ml
+0.4
-0.9
+0.2
-0.1
+0.2
stress
Paraquat dichloride 0.015 mg/ml
+0.0
+0.7
-0.5
-0.3
-0.1
nutrient
L-tyrosine
+0.2
-0.9
+0.3
+0.2
+0.0
nitrogen source
L-Glutamic (N)
+0.4
+0.2
-0.8
+0.1
+0.1
stress
Gentamicin 0.0016 mg/ml
+0.5
+0.4
-0.6
+0.1
-0.2
RCH2 grown on a colony of N2F3
-0.1
+1.3
+0.1
-0.4
-0.1
stress
Def Carbenicillin 0.008 mg/ml
+0.9
+0.2
-0.4
+0.2
-0.1
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.9
+0.1
-0.1
+0.5
+0.1
lb
LB
+0.1
+0.9
+0.2
+0.3
+0.2
RCH2 grown on a colony of N2C3
-0.7
+1.4
+0.4
+0.2
+0.3
anaerobic
nitrate reduction - anaerobic
+0.9
+0.4
+0.0
+0.3
+0.1
stress
Def 5-Hydroxymethylfurfural 5 mM
+0.5
+0.4
+0.2
+0.3
+0.2
RCH2 grown on a colony of 8R2A
+0.6
+1.2
-0.1
-0.1
+0.2
nitrogen source
nitrite (N)
+1.0
+0.6
-0.3
+0.3
+0.2
stress
Fusidic 0.016 mg/ml
+0.9
+0.4
-0.1
+0.4
+0.3
nitrogen source
L-Isoleucine (N)
+0.7
+0.4
+0.2
+0.2
+0.3
carbon source
RCH2 defined media
+0.9
+0.6
-0.3
+0.5
+0.2
carbon source
L-Lactate (C)
+0.7
+0.7
-0.1
+0.5
+0.2
stress
Cephalothin 0.04 mg/ml
+1.0
+0.3
-0.3
+0.6
+0.3
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.7
+0.6
+0.0
+0.5
+0.3
stress
nitrate 250 mM
+1.0
+0.6
-0.3
+0.7
+0.2
stress
Benzalkonium Chloride 0.002 mg/ml
+0.7
+0.6
-0.0
+0.5
+0.4
stress
Def Benzethonium chloride 0.008 mM
+1.3
+0.4
+0.0
+0.7
+0.3
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.7
+0.8
-0.0
+0.9
+0.5
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.2
+1.2
+0.3
+0.8
+0.6
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