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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0922 and Psest_0923 are separated by 38 nucleotides
Psest_0923 and Psest_0925 are separated by 561 nucleotides
Psest_0925 and Psest_0926 are separated by 73 nucleotides
Psest_0926 and Psest_0927 are separated by 111 nucleotides
Psest_0922: Psest_0922 - alkylhydroperoxidase AhpD family core domain, at 1,002,285 to 1,002,782
_0922
Psest_0923: Psest_0923 - Glutaredoxin, GrxC family, at 1,002,821 to 1,003,093
_0923
Psest_0925: Psest_0925 - Uncharacterized conserved protein, at 1,003,655 to 1,003,945
_0925
Psest_0926: Psest_0926 - Transcriptional regulator, at 1,004,019 to 1,004,945
_0926
Psest_0927: Psest_0927 - zinc-binding alcohol dehydrogenase family protein, at 1,005,057 to 1,006,067
_0927
Group
Condition
Psest
_0922
Psest
_0923
Psest
_0925
Psest
_0926
Psest
_0927
stress
Chlorate 75 mM
-1.6
+0.4
-0.9
-0.1
-0.4
temperature
LB 30C timecourse1 timepoint 3
-1.0
-0.2
-0.3
-0.4
-0.4
stress
Choline chloride 90 mM
-1.0
-0.1
-0.8
-0.0
+0.0
carbon source
propionate (C)
-1.6
-0.2
-0.6
+0.6
+0.1
stress
Furfuryl Alcohol 0.05 vol%
+0.3
-0.9
-0.7
+0.1
-0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.1
+0.2
+0.2
-0.3
-0.1
vitamin
No vitamins t2
-1.7
+0.1
+0.8
+0.0
-0.3
stress
Neomycin 0.004 mg/ml
-1.2
-0.1
+0.5
-0.1
-0.1
stress
D-Cycloserine 0.032 mg/ml
-1.0
+0.2
+0.3
-0.2
-0.2
stress
benzoic 0.4 mg/ml
-0.8
+0.2
+0.9
-0.2
+0.1
nutrient
L-tyrosine
+0.6
+0.2
-0.9
+0.3
+0.2
stress
D-Cycloserine 0.032 mg/ml
+1.2
-0.2
-0.5
+0.0
-0.1
stress
Cephalothin 0.04 mg/ml
-1.0
+1.0
+0.3
-0.3
+0.6
stress
Fusidic 0.016 mg/ml
-0.4
+0.9
+0.4
-0.1
+0.4
stress
nitrate 250 mM
-0.7
+1.0
+0.6
-0.3
+0.7
stress
Benzethonium chloride 0.0125 mM
+1.4
-0.1
+0.4
-0.4
+0.0
stress
Def Carbenicillin 0.008 mg/ml
+0.4
+0.9
+0.2
-0.4
+0.2
carbon source
D-Gluconic Acid (C)
+0.7
+0.2
+0.5
-0.4
+0.3
RCH2 grown on a colony of 8R2A
-0.1
+0.6
+1.2
-0.1
-0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.9
+0.7
+0.8
-0.0
+0.9
RCH2 grown on a colony of N2C3
+0.5
-0.7
+1.4
+0.4
+0.2
carbon source
L-Lactate (C)
+0.2
+0.7
+0.7
-0.1
+0.5
nitrogen source
nitrite (N)
+0.4
+1.0
+0.6
-0.3
+0.3
carbon source
RCH2 defined media
+0.2
+0.9
+0.6
-0.3
+0.5
lb
LB
+0.7
+0.1
+0.9
+0.2
+0.3
stress
nitrate 200 mM
+1.6
+0.6
+0.3
+0.2
-0.3
stress
5-Hydroxymethylfurfural 5 mM
+1.9
+0.2
+0.4
-0.1
+0.1
stress
Benzalkonium Chloride 0.002 mg/ml
+0.9
+0.7
+0.6
-0.0
+0.5
stress
Def Benzethonium chloride 0.008 mM
+0.6
+1.3
+0.4
+0.0
+0.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.5
+1.2
+1.2
+0.3
+0.8
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