Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0922 and Psest_0923 are separated by 38 nucleotidesPsest_0923 and Psest_0925 are separated by 561 nucleotidesPsest_0925 and Psest_0926 are separated by 73 nucleotidesPsest_0926 and Psest_0927 are separated by 111 nucleotides Psest_0922: Psest_0922 - alkylhydroperoxidase AhpD family core domain, at 1,002,285 to 1,002,782 _0922 Psest_0923: Psest_0923 - Glutaredoxin, GrxC family, at 1,002,821 to 1,003,093 _0923 Psest_0925: Psest_0925 - Uncharacterized conserved protein, at 1,003,655 to 1,003,945 _0925 Psest_0926: Psest_0926 - Transcriptional regulator, at 1,004,019 to 1,004,945 _0926 Psest_0927: Psest_0927 - zinc-binding alcohol dehydrogenase family protein, at 1,005,057 to 1,006,067 _0927
Group Condition Psest_0922 Psest_0923 Psest_0925 Psest_0926 Psest_0927
stress Chlorate 75 mM -1.6 +0.4 -0.9 -0.1 -0.4
temperature LB 30C timecourse1 timepoint 3 -1.0 -0.2 -0.3 -0.4 -0.4
stress Choline chloride 90 mM -1.0 -0.1 -0.8 -0.0 +0.0
carbon source propionate (C) -1.6 -0.2 -0.6 +0.6 +0.1
stress Furfuryl Alcohol 0.05 vol% +0.3 -0.9 -0.7 +0.1 -0.3
stress Polymyxin B sulfate 0.0001 mg/ml -1.1 +0.2 +0.2 -0.3 -0.1
vitamin No vitamins t2 -1.7 +0.1 +0.8 +0.0 -0.3
stress Neomycin 0.004 mg/ml -1.2 -0.1 +0.5 -0.1 -0.1
stress D-Cycloserine 0.032 mg/ml -1.0 +0.2 +0.3 -0.2 -0.2
stress benzoic 0.4 mg/ml -0.8 +0.2 +0.9 -0.2 +0.1
nutrient L-tyrosine +0.6 +0.2 -0.9 +0.3 +0.2
stress D-Cycloserine 0.032 mg/ml +1.2 -0.2 -0.5 +0.0 -0.1
stress Cephalothin 0.04 mg/ml -1.0 +1.0 +0.3 -0.3 +0.6
stress Fusidic 0.016 mg/ml -0.4 +0.9 +0.4 -0.1 +0.4
stress nitrate 250 mM -0.7 +1.0 +0.6 -0.3 +0.7
stress Benzethonium chloride 0.0125 mM +1.4 -0.1 +0.4 -0.4 +0.0
stress Def Carbenicillin 0.008 mg/ml +0.4 +0.9 +0.2 -0.4 +0.2
carbon source D-Gluconic Acid (C) +0.7 +0.2 +0.5 -0.4 +0.3
RCH2 grown on a colony of 8R2A -0.1 +0.6 +1.2 -0.1 -0.1
stress Def 2-Furfuraldehyde 0.032 vol% -0.9 +0.7 +0.8 -0.0 +0.9
RCH2 grown on a colony of N2C3 +0.5 -0.7 +1.4 +0.4 +0.2
carbon source L-Lactate (C) +0.2 +0.7 +0.7 -0.1 +0.5
nitrogen source nitrite (N) +0.4 +1.0 +0.6 -0.3 +0.3
carbon source RCH2 defined media +0.2 +0.9 +0.6 -0.3 +0.5
lb LB +0.7 +0.1 +0.9 +0.2 +0.3
stress nitrate 200 mM +1.6 +0.6 +0.3 +0.2 -0.3
stress 5-Hydroxymethylfurfural 5 mM +1.9 +0.2 +0.4 -0.1 +0.1
stress Benzalkonium Chloride 0.002 mg/ml +0.9 +0.7 +0.6 -0.0 +0.5
stress Def Benzethonium chloride 0.008 mM +0.6 +1.3 +0.4 +0.0 +0.7
stress Def Benzalkonium Chloride 0.002 mg/ml +0.5 +1.2 +1.2 +0.3 +0.8
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