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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0873 and Psest_0874 are separated by 122 nucleotides
Psest_0874 and Psest_0876 are separated by 1336 nucleotides
Psest_0876 and Psest_0877 are separated by 40 nucleotides
Psest_0877 and Psest_0879 are separated by 816 nucleotides
Psest_0873: Psest_0873 - HipA N-terminal domain, at 948,844 to 950,163
_0873
Psest_0874: Psest_0874 - Type I restriction-modification system methyltransferase subunit, at 950,286 to 952,262
_0874
Psest_0876: Psest_0876 - Type III restriction enzyme, res subunit./Type I restriction enzyme R protein N terminus (HSDR_N)., at 953,599 to 956,793
_0876
Psest_0877: Psest_0877 - Restriction endonuclease, at 956,834 to 957,745
_0877
Psest_0879: Psest_0879 - Transcriptional regulator, at 958,562 to 959,458
_0879
Group
Condition
Psest
_0873
Psest
_0874
Psest
_0876
Psest
_0877
Psest
_0879
stress
Def Carbenicillin 0.008 mg/ml
-0.7
-0.1
-0.2
-0.4
-1.0
stress
Gentamicin 0.0016 mg/ml
-0.6
-0.1
-0.0
-0.4
-0.8
carbon source
L-Lactate (C)
-0.5
-0.2
-0.2
-0.3
-0.6
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-0.5
-0.1
-0.1
-0.3
-0.6
carbon source
L-Proline (C)
-0.3
-0.2
-0.4
-0.4
-0.4
carbon source
RCH2 defined media
-0.5
-0.1
-0.1
-0.2
-0.7
stress
Nalidixic 0.001 mg/ml
-0.3
-0.4
-0.2
-0.3
-0.3
stress
Cephalothin 0.04 mg/ml
-0.6
+0.2
+0.2
-0.3
-0.9
stress
Doxycycline hyclate 0.0002 mg/ml
-0.3
+0.0
-0.2
-0.6
-0.3
stress
nitrate 250 mM
-0.7
-0.1
+0.2
+0.0
-0.8
temperature
LB 30C timecourse1 timepoint 3
-0.2
-0.1
-0.2
-0.4
-0.3
stress
Def Benzethonium chloride 0.008 mM
-0.5
+0.0
+0.1
-0.1
-0.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.6
-0.1
+0.1
-0.1
-0.5
carbon source
L-Lactate (C)
-0.2
+0.0
-0.1
-0.5
-0.2
stress
Fusidic 0.016 mg/ml
-0.6
+0.1
+0.3
-0.0
-0.7
carbon source
butyrate (C)
-0.4
+0.0
+0.1
-0.3
-0.2
stress
Carbenicillin 0.008 mg/ml
+0.0
+0.1
-0.1
-1.0
+0.1
stress
Benzethonium chloride 0.01 mM
-0.2
-0.2
+0.0
-0.5
+0.1
stress
Benzethonium chloride 0.0125 mM
+0.1
-0.2
-0.1
-0.3
-0.3
stress
Def Carbenicillin 0.02 mg/ml
-0.2
-0.1
-0.3
+0.3
-0.4
stress
Choline chloride 90 mM
+0.0
+0.1
+0.1
-0.8
-0.1
stress
Lactate-nitrate; anaerobic; copper stress sample3
-0.2
-0.1
-0.1
+0.5
-0.4
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.6
-0.0
+0.3
+0.5
-0.4
stress
nitrite 2.5 mM
-0.3
+0.0
+0.0
+0.5
-0.2
stress
Lactate-nitrate; anaerobic sample3
+0.0
-0.1
+0.0
+0.5
-0.3
nutrient
L-tyrosine
-0.1
-0.1
-0.1
+0.7
+0.0
RCH2 grown on a colony of N2A2
-0.4
+0.1
+0.1
+0.7
-0.1
stress
nitrate 200 mM
-0.1
-0.1
-0.0
+0.5
+0.2
stress
Paraquat dichloride 0.015 mg/ml
+0.2
+0.0
+0.1
+1.0
-0.4
carbon source
propionate (C)
-0.1
+0.0
+0.2
+1.0
+0.2
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