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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0084 and Psest_0085 are separated by 134 nucleotides
Psest_0085 and Psest_0086 are separated by 354 nucleotides
Psest_0086 and Psest_0087 are separated by 71 nucleotides
Psest_0087 and Psest_0088 are separated by 273 nucleotides
Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components
(from data)
, at 85,079 to 87,103
_0084
Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component
(from data)
, at 87,238 to 88,191
_0085
Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971
_0086
Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285
_0087
Psest_0088: Psest_0088 - phosphonate metabolism protein PhnP, at 89,559 to 90,308
_0088
Group
Condition
Psest
_0084
Psest
_0085
Psest
_0086
Psest
_0087
Psest
_0088
carbon source
a-Ketoglutaric (C)
-4.5
-5.0
-0.0
-0.4
-0.0
carbon source
a-Ketoglutaric (C)
-4.3
-5.6
-0.5
+0.3
+0.2
stress
D-Cycloserine 0.032 mg/ml
-0.2
-0.4
-1.5
-0.3
-0.7
stress
Cobalt chloride 0.08 mM
-0.1
-0.1
-1.6
-0.2
-0.9
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
-0.0
-1.7
+0.0
-1.2
temperature
LB 30C timecourse2 timepoint 1
-0.3
-0.5
-0.3
-0.7
-0.4
RCH2 grown on a colony of Serratia
-0.3
+0.0
-1.5
+0.2
-0.4
stress
Furfuryl Alcohol 0.05 vol%
-0.2
+0.1
-0.5
-1.0
-0.3
stress
Nalidixic 0.00390625 mg/ml
-0.0
+0.0
-1.8
-0.1
+0.4
stress
Spectinomycin 0.00625 mg/ml
+0.1
+0.3
-1.7
-0.2
-0.1
RCH2 grown on a colony of N2F3
+0.3
+0.2
-1.1
+0.2
-1.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.0
-0.1
+0.3
-1.4
-0.3
stress
Def Neomycin 0.0008 mg/ml
-0.1
+0.1
-0.8
-0.8
+0.5
stress
Lactate-nitrate; anaerobic; copper stress sample3
-0.0
+0.2
-1.1
+0.3
-0.4
stress
Lactate-nitrate; anaerobic; dichromate stress sample2
-0.1
-0.1
-0.6
+0.8
-0.6
carbon source
propionate (C)
+0.4
+0.0
+0.7
-1.4
-0.3
stress
Cephalothin 0.04 mg/ml
+0.2
+0.0
-1.3
+0.8
-0.0
stress
syringaldehyde 4 mM
+0.2
+0.3
-0.7
-0.8
+0.6
stress
Spectinomycin 0.00625 mg/ml
-0.3
-0.2
+1.0
-0.1
-0.8
stress
Cobalt chloride 0.06 mM
-0.1
+0.2
-0.7
-0.4
+0.7
stress
A22 0.002 mg/ml
+0.0
+0.3
+0.7
-0.6
-0.5
stress
nitrate 200 mM
-0.2
-0.1
+0.8
-0.6
+0.3
nitrogen source
L-Glutamic (N)
-0.0
+0.1
-1.0
+0.9
+0.3
nitrogen source
nitrate (N)
-0.2
-0.0
+0.6
+0.7
-0.4
stress
Benzethonium chloride 0.01 mM
+0.2
+0.0
-0.1
+1.2
-0.4
RCH2 grown on a colony of ecoli
-0.1
+0.2
+0.8
+0.7
-0.6
RCH2 grown on a colony of Serratia
+0.3
-0.5
+1.2
+0.9
-0.2
radiation
Ionizing radiation, 319.06 Gy,
+0.1
+0.1
+1.0
+0.7
+0.6
stress
Benzalkonium Chloride 0.002 mg/ml
+0.4
+0.3
+0.7
+0.8
+0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.5
+0.6
+1.8
-0.1
+0.3
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