Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0084 and Psest_0085 are separated by 134 nucleotidesPsest_0085 and Psest_0086 are separated by 354 nucleotidesPsest_0086 and Psest_0087 are separated by 71 nucleotidesPsest_0087 and Psest_0088 are separated by 273 nucleotides Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data), at 85,079 to 87,103 _0084 Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component (from data), at 87,238 to 88,191 _0085 Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971 _0086 Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285 _0087 Psest_0088: Psest_0088 - phosphonate metabolism protein PhnP, at 89,559 to 90,308 _0088
Group Condition Psest_0084 Psest_0085 Psest_0086 Psest_0087 Psest_0088
carbon source a-Ketoglutaric (C) -4.5 -5.0 -0.0 -0.4 -0.0
carbon source a-Ketoglutaric (C) -4.3 -5.6 -0.5 +0.3 +0.2
stress D-Cycloserine 0.032 mg/ml -0.2 -0.4 -1.5 -0.3 -0.7
stress Cobalt chloride 0.08 mM -0.1 -0.1 -1.6 -0.2 -0.9
stress Def 2-Furfuraldehyde 0.032 vol% +0.2 -0.0 -1.7 +0.0 -1.2
temperature LB 30C timecourse2 timepoint 1 -0.3 -0.5 -0.3 -0.7 -0.4
RCH2 grown on a colony of Serratia -0.3 +0.0 -1.5 +0.2 -0.4
stress Furfuryl Alcohol 0.05 vol% -0.2 +0.1 -0.5 -1.0 -0.3
stress Nalidixic 0.00390625 mg/ml -0.0 +0.0 -1.8 -0.1 +0.4
stress Spectinomycin 0.00625 mg/ml +0.1 +0.3 -1.7 -0.2 -0.1
RCH2 grown on a colony of N2F3 +0.3 +0.2 -1.1 +0.2 -1.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.0 -0.1 +0.3 -1.4 -0.3
stress Def Neomycin 0.0008 mg/ml -0.1 +0.1 -0.8 -0.8 +0.5
stress Lactate-nitrate; anaerobic; copper stress sample3 -0.0 +0.2 -1.1 +0.3 -0.4
stress Lactate-nitrate; anaerobic; dichromate stress sample2 -0.1 -0.1 -0.6 +0.8 -0.6
carbon source propionate (C) +0.4 +0.0 +0.7 -1.4 -0.3
stress Cephalothin 0.04 mg/ml +0.2 +0.0 -1.3 +0.8 -0.0
stress syringaldehyde 4 mM +0.2 +0.3 -0.7 -0.8 +0.6
stress Spectinomycin 0.00625 mg/ml -0.3 -0.2 +1.0 -0.1 -0.8
stress Cobalt chloride 0.06 mM -0.1 +0.2 -0.7 -0.4 +0.7
stress A22 0.002 mg/ml +0.0 +0.3 +0.7 -0.6 -0.5
stress nitrate 200 mM -0.2 -0.1 +0.8 -0.6 +0.3
nitrogen source L-Glutamic (N) -0.0 +0.1 -1.0 +0.9 +0.3
nitrogen source nitrate (N) -0.2 -0.0 +0.6 +0.7 -0.4
stress Benzethonium chloride 0.01 mM +0.2 +0.0 -0.1 +1.2 -0.4
RCH2 grown on a colony of ecoli -0.1 +0.2 +0.8 +0.7 -0.6
RCH2 grown on a colony of Serratia +0.3 -0.5 +1.2 +0.9 -0.2
radiation Ionizing radiation, 319.06 Gy, +0.1 +0.1 +1.0 +0.7 +0.6
stress Benzalkonium Chloride 0.002 mg/ml +0.4 +0.3 +0.7 +0.8 +0.4
stress Polymyxin B sulfate 0.0001 mg/ml +0.5 +0.6 +1.8 -0.1 +0.3
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