Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0083 and Psest_0084 overlap by 4 nucleotidesPsest_0084 and Psest_0085 are separated by 134 nucleotidesPsest_0085 and Psest_0086 are separated by 354 nucleotidesPsest_0086 and Psest_0087 are separated by 71 nucleotides Psest_0083: Psest_0083 - Uncharacterized conserved protein, at 84,675 to 85,082 _0083 Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components (from data), at 85,079 to 87,103 _0084 Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component (from data), at 87,238 to 88,191 _0085 Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971 _0086 Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285 _0087
Group Condition Psest_0083 Psest_0084 Psest_0085 Psest_0086 Psest_0087
carbon source a-Ketoglutaric (C) -0.7 -4.5 -5.0 -0.0 -0.4
carbon source a-Ketoglutaric (C) -0.4 -4.3 -5.6 -0.5 +0.3
carbon source L-tyrosine (C) -4.1 -0.1 +0.0 -0.5 -0.3
RCH2 grown on a colony of N2F3 -1.6 -0.0 -0.0 -0.6 -0.6
anaerobic Nitrate/ lactate media with Nitrate 50mM -1.4 +0.1 +0.1 -0.9 -0.4
stress Furfuryl Alcohol 0.05 vol% -0.8 -0.2 +0.1 -0.5 -1.0
stress D-Cycloserine 0.032 mg/ml +0.2 -0.2 -0.4 -1.5 -0.3
stress Paraquat dichloride 0.015 mg/ml -0.8 -0.5 -0.6 +0.2 -0.4
RCH2 grown on a colony of Serratia -0.3 -0.3 +0.0 -1.5 +0.2
stress syringaldehyde 4 mM -0.8 +0.2 +0.3 -0.7 -0.8
RCH2 grown on a colony of N2F3 -1.0 +0.3 +0.2 -1.1 +0.2
temperature LB 30C timecourse2 timepoint 1 +0.6 -0.3 -0.5 -0.3 -0.7
stress Choline Lysine 20 mM -1.7 -0.1 +0.2 +0.3 +0.2
stress Nalidixic 0.00390625 mg/ml -1.3 -0.2 -0.2 +0.5 +0.2
stress Def 2-Furfuraldehyde 0.032 vol% +0.9 +0.2 -0.0 -1.7 +0.0
carbon source propionate (C) -0.2 +0.4 +0.0 +0.7 -1.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.7 +0.0 -0.1 +0.3 -1.4
nitrogen source nitrite (N) +1.6 -0.1 -0.6 -0.5 -0.4
stress Def Benzalkonium Chloride 0.002 mg/ml +0.7 -0.1 -0.1 -1.1 +0.4
stress Def Carbenicillin 0.008 mg/ml +1.3 -0.1 -0.4 -0.6 +0.2
RCH2 grown on a colony of Serratia -1.5 +0.3 -0.5 +1.2 +0.9
carbon source acetate (C) +1.3 -0.2 -0.2 +0.2 -0.5
stress Neomycin 0.004 mg/ml +1.0 -0.0 -0.0 -0.8 +0.7
stress nitrate 200 mM +1.3 -0.2 -0.1 +0.8 -0.6
nitrogen source nitrite (N) +1.3 -0.0 -0.3 +0.5 +0.3
stress Cephalothin 0.04 mg/ml +2.3 +0.2 +0.0 -1.3 +0.8
stress Fusidic 0.016 mg/ml +1.3 +0.2 -0.2 +0.1 +0.7
stress Def Chloride 400 mM +0.7 +0.4 +0.5 -0.2 +0.5
stress Benzalkonium Chloride 0.002 mg/ml +1.2 +0.4 +0.3 +0.7 +0.8
stress Polymyxin B sulfate 0.0001 mg/ml +2.0 +0.5 +0.6 +1.8 -0.1
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