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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0083 and Psest_0084 overlap by 4 nucleotides
Psest_0084 and Psest_0085 are separated by 134 nucleotides
Psest_0085 and Psest_0086 are separated by 354 nucleotides
Psest_0086 and Psest_0087 are separated by 71 nucleotides
Psest_0083: Psest_0083 - Uncharacterized conserved protein, at 84,675 to 85,082
_0083
Psest_0084: Psest_0084 - alpha-ketoglutarate TRAP transporter, 4TM/12TM components
(from data)
, at 85,079 to 87,103
_0084
Psest_0085: Psest_0085 - alpha-ketoglutarate TRAP transporter, solute receptor component
(from data)
, at 87,238 to 88,191
_0085
Psest_0086: Psest_0086 - hypothetical protein, at 88,546 to 88,971
_0086
Psest_0087: Psest_0087 - hypothetical protein, at 89,043 to 89,285
_0087
Group
Condition
Psest
_0083
Psest
_0084
Psest
_0085
Psest
_0086
Psest
_0087
carbon source
a-Ketoglutaric (C)
-0.7
-4.5
-5.0
-0.0
-0.4
carbon source
a-Ketoglutaric (C)
-0.4
-4.3
-5.6
-0.5
+0.3
carbon source
L-tyrosine (C)
-4.1
-0.1
+0.0
-0.5
-0.3
RCH2 grown on a colony of N2F3
-1.6
-0.0
-0.0
-0.6
-0.6
anaerobic
Nitrate/ lactate media with Nitrate 50mM
-1.4
+0.1
+0.1
-0.9
-0.4
stress
Furfuryl Alcohol 0.05 vol%
-0.8
-0.2
+0.1
-0.5
-1.0
stress
D-Cycloserine 0.032 mg/ml
+0.2
-0.2
-0.4
-1.5
-0.3
stress
Paraquat dichloride 0.015 mg/ml
-0.8
-0.5
-0.6
+0.2
-0.4
RCH2 grown on a colony of Serratia
-0.3
-0.3
+0.0
-1.5
+0.2
stress
syringaldehyde 4 mM
-0.8
+0.2
+0.3
-0.7
-0.8
RCH2 grown on a colony of N2F3
-1.0
+0.3
+0.2
-1.1
+0.2
temperature
LB 30C timecourse2 timepoint 1
+0.6
-0.3
-0.5
-0.3
-0.7
stress
Choline Lysine 20 mM
-1.7
-0.1
+0.2
+0.3
+0.2
stress
Nalidixic 0.00390625 mg/ml
-1.3
-0.2
-0.2
+0.5
+0.2
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.9
+0.2
-0.0
-1.7
+0.0
carbon source
propionate (C)
-0.2
+0.4
+0.0
+0.7
-1.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.7
+0.0
-0.1
+0.3
-1.4
nitrogen source
nitrite (N)
+1.6
-0.1
-0.6
-0.5
-0.4
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.7
-0.1
-0.1
-1.1
+0.4
stress
Def Carbenicillin 0.008 mg/ml
+1.3
-0.1
-0.4
-0.6
+0.2
RCH2 grown on a colony of Serratia
-1.5
+0.3
-0.5
+1.2
+0.9
carbon source
acetate (C)
+1.3
-0.2
-0.2
+0.2
-0.5
stress
Neomycin 0.004 mg/ml
+1.0
-0.0
-0.0
-0.8
+0.7
stress
nitrate 200 mM
+1.3
-0.2
-0.1
+0.8
-0.6
nitrogen source
nitrite (N)
+1.3
-0.0
-0.3
+0.5
+0.3
stress
Cephalothin 0.04 mg/ml
+2.3
+0.2
+0.0
-1.3
+0.8
stress
Fusidic 0.016 mg/ml
+1.3
+0.2
-0.2
+0.1
+0.7
stress
Def Chloride 400 mM
+0.7
+0.4
+0.5
-0.2
+0.5
stress
Benzalkonium Chloride 0.002 mg/ml
+1.2
+0.4
+0.3
+0.7
+0.8
stress
Polymyxin B sulfate 0.0001 mg/ml
+2.0
+0.5
+0.6
+1.8
-0.1
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