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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0078 and Psest_0079 are separated by 94 nucleotides
Psest_0079 and Psest_0080 are separated by 143 nucleotides
Psest_0080 and Psest_0081 are separated by 217 nucleotides
Psest_0081 and Psest_0082 are separated by 10 nucleotides
Psest_0078: Psest_0078 - hypothetical protein, at 79,486 to 79,899
_0078
Psest_0079: Psest_0079 - hypothetical protein, at 79,994 to 80,419
_0079
Psest_0080: Psest_0080 - Predicted aminopeptidase, at 80,563 to 81,621
_0080
Psest_0081: Psest_0081 - hypothetical protein, at 81,839 to 83,008
_0081
Psest_0082: Psest_0082 - Domain of unknown function (DUF892)., at 83,019 to 83,738
_0082
Group
Condition
Psest
_0078
Psest
_0079
Psest
_0080
Psest
_0081
Psest
_0082
RCH2 grown on a colony of Serratia
-2.1
-0.9
-0.1
+0.4
-1.0
stress
Furfuryl Alcohol 0.05 vol%
-1.5
-0.4
+0.2
-0.2
-1.0
stress
Cobalt chloride 0.08 mM
-3.0
+0.1
-0.5
+0.1
+0.6
RCH2 grown on a colony of N2F3
-0.5
-1.1
-0.4
+0.4
-1.2
stress
Cisplatin 0.003 mg/ml
-2.2
-0.3
+0.2
-0.0
-0.4
stress
Def Cephalothin 0.04 mg/ml
-2.4
-0.2
+0.0
+0.0
+0.1
stress
D-Cycloserine 0.032 mg/ml
-1.5
+0.6
+0.1
+0.1
-1.6
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.4
-0.9
+0.3
-0.0
-1.2
RCH2 grown on a colony of N2C3
-3.3
+1.4
+0.4
-0.0
-0.7
nitrogen source
L-Valine (N)
-3.1
+0.1
+0.2
-0.1
+0.8
stress
Lomefloxacin 0.0001 mM
-1.1
+0.1
+0.2
+0.1
-1.4
RCH2 grown on a colony of ecoli
-0.1
-0.3
+0.3
-0.1
-1.8
stress
Vanillin 2 mM
-2.1
-0.2
-0.1
-0.0
+0.5
nitrogen source
L-Glutamic (N)
-1.6
+0.2
-0.2
+0.2
-0.6
stress
Def Cephalothin 0.08 mg/ml
-0.5
-1.2
-0.4
+0.1
+0.4
nitrogen source
Putrescine (N)
-1.9
+0.5
+0.2
-0.1
-0.1
lb
LB
-1.4
-0.5
+0.2
+0.1
+0.5
stress
Def Carbenicillin 0.008 mg/ml
-1.6
+0.4
-0.1
-0.3
+0.6
stress
Aluminum chloride 0.3 mM
-1.9
+0.3
+0.1
+0.2
+0.4
RCH2 grown on a colony of N2F3
-1.7
+0.3
+0.6
+0.3
+0.1
stress
nitrate 200 mM
-2.1
+1.0
+0.2
+0.1
+0.4
stress
Choline chloride 90 mM
-1.2
-0.7
+0.6
-0.1
+1.1
stress
D-Cycloserine 0.032 mg/ml
-1.1
-0.1
+0.2
+0.3
+1.1
nitrogen source
nitrite (N)
+1.0
+0.8
-0.2
-0.4
-0.8
stress
Choline Lysine 20 mM
-1.1
+0.6
+0.5
+0.0
+0.6
stress
Def Neomycin 0.0008 mg/ml
+1.4
-0.3
+0.6
+0.3
-0.6
RCH2 grown on a colony of 8R2A
+1.6
-0.3
+0.4
-0.1
+0.4
stress
Def Carbenicillin 0.02 mg/ml
-0.1
+1.5
+0.2
-0.2
+0.8
stress
L-Lysine 200 mM
+1.3
-0.1
+0.4
+0.1
+0.9
nitrogen source
L-Proline (N)
+1.3
+0.7
+0.0
+0.1
+0.6
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