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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0804 and Psest_0805 are separated by 23 nucleotides
Psest_0805 and Psest_0806 overlap by 4 nucleotides
Psest_0806 and Psest_0807 overlap by 4 nucleotides
Psest_0807 and Psest_0808 overlap by 4 nucleotides
Psest_0804: Psest_0804 - hypothetical protein, at 878,428 to 881,445
_0804
Psest_0805: Psest_0805 - hypothetical protein, at 881,469 to 881,942
_0805
Psest_0806: Psest_0806 - prepilin-type N-terminal cleavage/methylation domain, at 881,939 to 883,054
_0806
Psest_0807: Psest_0807 - type IV pilus modification protein PilV, at 883,051 to 883,620
_0807
Psest_0808: Psest_0808 - prepilin-type N-terminal cleavage/methylation domain, at 883,617 to 884,009
_0808
Group
Condition
Psest
_0804
Psest
_0805
Psest
_0806
Psest
_0807
Psest
_0808
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.3
-1.4
-0.6
-0.6
-0.5
stress
Benzethonium chloride 0.01 mM
-0.1
-1.5
-0.6
+0.1
-0.2
stress
Benzethonium chloride 0.0125 mM
-0.1
-1.4
-0.4
+0.4
-0.6
stress
Cisplatin 0.003 mg/ml
+0.0
-1.7
+0.4
-0.1
-0.5
stress
Paraquat dichloride 0.015 mg/ml
+0.1
-1.1
-0.1
-0.0
-0.5
stress
Carbenicillin 0.008 mg/ml
+0.1
-1.3
-0.2
-0.3
+0.1
stress
Chlorate 75 mM
-0.1
-1.3
-0.2
+0.4
-0.3
stress
L-Lysine 200 mM
-0.1
-1.1
+0.1
+0.1
-0.5
stress
nitrate 250 mM
-0.7
+0.1
-0.5
+0.5
-0.8
stress
Def Benzethonium chloride 0.008 mM
-0.6
+0.1
-0.2
+0.1
-0.8
stress
Zinc 0.12 mM
-0.0
-1.3
+0.3
-0.0
-0.2
vitamin
With vitamins t1
+0.1
-1.7
+0.4
-0.1
+0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.6
-0.0
-0.2
+0.5
-0.6
stress
nitrate 200 mM
+0.1
-1.0
+0.3
-0.3
-0.0
vitamin
With vitamins t2
+0.1
-1.4
+0.5
-0.2
+0.2
stress
Fusidic 0.016 mg/ml
-0.4
+0.5
-0.1
+0.3
-0.7
nutrient
Min media with glucose
+0.2
-1.0
+0.4
-0.4
+0.4
stress
Nalidixic 0.00390625 mg/ml
-0.3
+0.9
-0.1
+0.3
-0.4
RCH2 grown on a colony of Serratia
+0.4
+1.1
-0.6
-0.4
-0.2
stress
Def Carbenicillin 0.008 mg/ml
-0.4
+0.6
+0.3
+0.7
-0.7
stress
Cephalothin 0.04 mg/ml
-0.5
+0.3
+0.3
+0.6
-0.1
lb
LB
-0.2
+0.8
-0.2
-0.1
+0.5
stress
Choline chloride 90 mM
-0.0
+1.2
+0.3
+0.2
-0.4
RCH2 grown on a colony of Serratia
+0.1
+0.8
+0.4
-0.3
+0.3
nutrient
L-tyrosine
+0.1
+1.1
-0.0
-0.2
+0.3
stress
5-Hydroxymethylfurfural 5 mM
-0.1
+1.1
+0.1
-0.0
+0.5
stress
Furfuryl Alcohol 0.05 vol%
+0.4
+1.3
+0.1
-0.3
+0.2
RCH2 grown on a colony of N2A2
+0.0
+0.2
+0.4
+0.6
+0.7
temperature
LB 30C timecourse2 timepoint 1
+0.0
+1.1
+0.4
+0.3
+0.1
RCH2 grown on a colony of N2A2
-0.1
+2.7
-0.1
+0.4
+0.7
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