Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0788 and Psest_0789 are separated by 216 nucleotidesPsest_0789 and Psest_0790 are separated by 68 nucleotidesPsest_0790 and Psest_0791 are separated by 166 nucleotidesPsest_0791 and Psest_0792 are separated by 275 nucleotides Psest_0788: Psest_0788 - Uncharacterized conserved protein, at 861,745 to 862,164 _0788 Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734 _0789 Psest_0790: Psest_0790 - Uncharacterized protein conserved in bacteria, at 862,803 to 863,243 _0790 Psest_0791: Psest_0791 - Acyl-CoA dehydrogenases, at 863,410 to 864,660 _0791 Psest_0792: Psest_0792 - Regulator of nitric oxide reductase transcription, at 864,936 to 867,113 _0792
Group Condition Psest_0788 Psest_0789 Psest_0790 Psest_0791 Psest_0792
carbon source L-tyrosine (C) -0.2 -1.4 -2.1 +0.6 -0.4
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample3 +0.3 +0.1 -2.8 +0.1 -1.0
anaerobic Nitrite/ lactate media with Nitrite 20mM +0.1 -0.4 -1.1 -0.3 -1.3
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample2 +0.1 +0.0 -2.2 +0.1 -0.9
metal limitation Lactate-nitrite; anaerobic; sample2 +0.2 +0.1 -2.5 +0.2 -0.8
metal limitation Lactate-nitrite; anaerobic; with copper; sample3 +0.2 +0.3 -2.2 +0.3 -0.7
stress Chlorate 75 mM +0.4 -1.8 -1.5 +0.6 +0.1
stress Spectinomycin 0.00625 mg/ml +0.2 -0.4 -1.2 -0.7 -0.0
metal limitation Lactate-nitrite; anaerobic; sample3 +0.4 +0.1 -2.2 +0.5 -0.7
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample1 +0.4 +0.3 -2.2 +0.4 -0.8
stress Lactate-nitrate; anaerobic; cobalt stress sample3 +0.2 +0.6 -2.2 -0.0 -0.4
metal limitation Lactate-nitrite with YE; anaerobic; sample3 +0.2 -0.0 -1.6 +0.2 -0.6
anaerobic Nitrite/ lactate media with Nitrite 20mM +0.3 +0.1 -0.5 -0.3 -1.3
stress Anaerobic 500 uM Zinc chloride sample1 +0.1 +0.1 -2.1 +0.3 -0.1
metal limitation Lactate-nitrite; anaerobic; with copper; sample1 +0.2 +0.2 -2.0 +0.6 -0.7
metal limitation Lactate-nitrite with YE; anaerobic; sample2 +0.1 +0.3 -1.8 +0.4 -0.6
metal limitation Lactate-nitrite; anaerobic; with copper; sample2 +0.3 +0.1 -1.5 +0.3 -0.7
stress nitrate 250 mM +0.4 -0.3 -1.1 +0.1 -0.5
stress Lactate-nitrate; anaerobic; nickel stress sample2 +0.3 -0.5 -1.4 +0.5 -0.3
stress Gentamicin 0.0016 mg/ml +0.4 +0.2 -1.8 -0.2 -0.0
stress Def 2-Furfuraldehyde 0.032 vol% +0.6 -0.5 -1.0 -0.6 +0.2
RCH2 grown on a colony of Serratia -0.3 -0.8 +0.8 -0.7 +0.1
metal limitation Lactate-nitrite with YE; anaerobic; sample1 +0.5 +0.3 -1.2 +0.4 -0.7
stress Doxycycline hyclate 0.0002 mg/ml +0.1 -1.5 +1.0 -0.5 +0.1
stress Def Carbenicillin 0.008 mg/ml +0.8 +0.6 -2.0 +0.3 -0.1
stress Nickel (II) chloride 0.75 mM +0.5 -0.3 +0.6 -0.9 -0.2
stress Cobalt chloride 0.08 mM +0.4 +0.4 -1.1 +0.3 -0.2
stress Lactate-nitrate; anaerobic; nickel stress sample1 +0.3 +0.4 -1.2 +0.6 -0.2
nitrogen source nitrite (N) +0.6 +1.0 -1.2 +0.2 -0.3
stress Nalidixic 0.00390625 mg/ml +0.3 -0.6 +2.3 -0.0 +0.1
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