Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0786 and Psest_0787 are separated by 363 nucleotidesPsest_0787 and Psest_0788 overlap by 17 nucleotidesPsest_0788 and Psest_0789 are separated by 216 nucleotidesPsest_0789 and Psest_0790 are separated by 68 nucleotides Psest_0786: Psest_0786 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 859,374 to 860,399 _0786 Psest_0787: Psest_0787 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 860,763 to 861,761 _0787 Psest_0788: Psest_0788 - Uncharacterized conserved protein, at 861,745 to 862,164 _0788 Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734 _0789 Psest_0790: Psest_0790 - Uncharacterized protein conserved in bacteria, at 862,803 to 863,243 _0790
Group Condition Psest_0786 Psest_0787 Psest_0788 Psest_0789 Psest_0790
carbon source L-tyrosine (C) +0.1 -0.2 -0.2 -1.4 -2.1
stress Chlorate 75 mM +0.4 +0.1 +0.4 -1.8 -1.5
radiation Ionizing radiation, 319.06 Gy, +0.0 -0.1 +0.2 -0.3 -1.8
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample3 +0.1 +0.2 +0.3 +0.1 -2.8
stress Anaerobic 500 uM Zinc chloride sample1 -0.0 -0.0 +0.1 +0.1 -2.1
metal limitation Lactate-nitrite; anaerobic; sample2 +0.3 +0.2 +0.2 +0.1 -2.5
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample2 +0.2 +0.2 +0.1 +0.0 -2.2
metal limitation Lactate-nitrite; anaerobic; sample3 +0.1 +0.1 +0.4 +0.1 -2.2
metal limitation Lactate-nitrite; anaerobic; with copper; sample1 +0.2 -0.1 +0.2 +0.2 -2.0
metal limitation Lactate-nitrite; anaerobic; with copper; sample3 +0.2 +0.3 +0.2 +0.3 -2.2
stress nitrate 250 mM +0.3 -0.5 +0.4 -0.3 -1.1
stress Def 2-Furfuraldehyde 0.032 vol% -0.1 -0.2 +0.6 -0.5 -1.0
stress Lactate-nitrate; anaerobic; nickel stress sample2 +0.3 +0.2 +0.3 -0.5 -1.4
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample1 +0.3 +0.2 +0.4 +0.3 -2.2
metal limitation Lactate-nitrite with YE; anaerobic; sample2 +0.2 +0.1 +0.1 +0.3 -1.8
metal limitation Lactate-nitrite with YE; anaerobic; sample3 +0.2 +0.3 +0.2 -0.0 -1.6
stress Lactate-nitrate; anaerobic; cobalt stress sample3 +0.2 +0.2 +0.2 +0.6 -2.2
stress Gentamicin 0.0016 mg/ml +0.4 -0.1 +0.4 +0.2 -1.8
stress Cobalt chloride 0.08 mM -0.1 -0.2 +0.4 +0.4 -1.1
stress Doxycycline hyclate 0.0002 mg/ml -0.3 +0.2 +0.1 -1.5 +1.0
stress Lactate-nitrate; anaerobic; nickel stress sample1 +0.3 -0.1 +0.3 +0.4 -1.2
RCH2 grown on a colony of Serratia +0.3 -0.1 -0.3 -0.8 +0.8
stress Def Carbenicillin 0.008 mg/ml +0.6 -0.1 +0.8 +0.6 -2.0
metal limitation Lactate-nitrite with YE; anaerobic; sample1 +0.2 +0.3 +0.5 +0.3 -1.2
stress Fusidic 0.016 mg/ml +0.4 -0.2 +0.5 +0.5 -1.0
stress Cephalothin 0.04 mg/ml +0.7 +0.0 +0.4 +0.4 -1.2
nitrogen source nitrite (N) +0.4 -0.1 +0.6 +1.0 -1.2
RCH2 grown on a colony of 8R2A +0.3 -0.3 -0.0 -0.1 +1.7
stress Nalidixic 0.00390625 mg/ml -0.0 -0.3 +0.3 -0.6 +2.3
stress Choline Lysine 20 mM +0.4 +0.1 -0.3 +1.0 +0.6
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