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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0785 and Psest_0786 are separated by 324 nucleotides
Psest_0786 and Psest_0787 are separated by 363 nucleotides
Psest_0787 and Psest_0788 overlap by 17 nucleotides
Psest_0788 and Psest_0789 are separated by 216 nucleotides
Psest_0785: Psest_0785 - Thioredoxin reductase, at 858,102 to 859,049
_0785
Psest_0786: Psest_0786 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 859,374 to 860,399
_0786
Psest_0787: Psest_0787 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 860,763 to 861,761
_0787
Psest_0788: Psest_0788 - Uncharacterized conserved protein, at 861,745 to 862,164
_0788
Psest_0789: Psest_0789 - hypothetical protein, at 862,381 to 862,734
_0789
Group
Condition
Psest
_0785
Psest
_0786
Psest
_0787
Psest
_0788
Psest
_0789
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.8
-0.5
-0.3
-1.0
-0.1
stress
Def Chlorate 40 mM
-0.9
-0.4
-0.3
-0.4
-0.6
anaerobic
Nitrate/ lactate media with Nitrate 250mM
-2.5
-0.1
-0.1
+0.3
-0.1
stress
Def Chloride 400 mM
-0.8
-0.3
-0.2
-0.2
-0.6
carbon source
L-tyrosine (C)
-0.5
+0.1
-0.2
-0.2
-1.4
stress
nitrate 200 mM
-0.7
+0.1
-0.2
-0.3
-1.0
stress
Def 5-Hydroxymethylfurfural 5 mM
-0.4
-0.1
-0.6
-0.4
-0.5
stress
D-Cycloserine 0.032 mg/ml
-1.3
-0.1
-0.1
+0.2
-0.4
stress
A22 0.005 mg/ml
-0.7
-0.1
-0.3
+0.3
-0.9
stress
Def Benzalkonium Chloride 0.002 mg/ml
-1.0
+0.1
-0.5
+0.3
-0.4
stress
Doxycycline hyclate 0.0002 mg/ml
+0.0
-0.3
+0.2
+0.1
-1.5
stress
Chlorate 75 mM
-0.5
+0.4
+0.1
+0.4
-1.8
stress
nitrate 250 mM
-1.3
+0.3
-0.5
+0.4
-0.3
RCH2 grown on a colony of N2C3
-1.0
-0.1
-0.4
-0.2
+0.3
stress
Chloride 200 mM
-1.4
-0.1
-0.1
+0.3
-0.0
lb
LB
+0.4
-0.1
-0.1
+0.1
-1.2
stress
Carbenicillin 0.008 mg/ml
+0.7
-0.2
-0.4
-0.2
-0.6
RCH2 grown on a colony of ecoli
-1.1
+0.3
-0.4
+0.4
+0.2
stress
perchlorate 12.5 mM
+0.8
-0.0
+0.1
-0.2
-0.6
stress
Fusidic 0.016 mg/ml
-0.5
+0.4
-0.2
+0.5
+0.5
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.9
-0.1
-0.2
+0.6
-0.5
carbon source
butyrate (C)
-0.5
+0.3
-0.0
+0.6
+0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+1.2
-0.0
+0.3
-0.3
-0.4
stress
Spectinomycin 0.00625 mg/ml
+1.1
+0.1
-0.2
+0.2
-0.4
stress
Def Carbenicillin 0.008 mg/ml
-0.9
+0.6
-0.1
+0.8
+0.6
stress
Paraquat dichloride 0.015 mg/ml
+0.8
+0.1
-0.1
-0.2
+0.7
RCH2 grown on a colony of N2A2
-0.3
+0.2
-0.1
+0.1
+1.3
nitrogen source
L-Glutamic (N)
+0.8
+0.1
-0.3
+0.3
+0.5
stress
Lactate-nitrate; anaerobic; cobalt stress sample3
+0.9
+0.2
+0.2
+0.2
+0.6
nitrogen source
nitrite (N)
+0.6
+0.4
-0.1
+0.6
+1.0
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