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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0779 and Psest_0780 overlap by 1 nucleotides
Psest_0780 and Psest_0781 are separated by 227 nucleotides
Psest_0781 and Psest_0782 are separated by 250 nucleotides
Psest_0782 and Psest_0783 are separated by 107 nucleotides
Psest_0779: Psest_0779 - tyrosine aminotransferase (EC 2.6.1.57)
(from data)
, at 847,835 to 849,031
_0779
Psest_0780: Psest_0780 - Pterin-4a-carbinolamine dehydratase, at 849,031 to 849,387
_0780
Psest_0781: Psest_0781 - phenylalanine-4-hydroxylase, monomeric form, at 849,615 to 850,400
_0781
Psest_0782: Psest_0782 - Transcriptional regulator of aromatic amino acids metabolism, at 850,651 to 852,210
_0782
Psest_0783: Psest_0783 - PAS domain S-box, at 852,318 to 856,490
_0783
Group
Condition
Psest
_0779
Psest
_0780
Psest
_0781
Psest
_0782
Psest
_0783
carbon source
L-tyrosine (C)
-5.0
N.D.
-2.5
-4.8
+0.1
carbon source
L-tyrosine (C)
-4.8
N.D.
-2.3
-4.4
+0.0
RCH2 grown on a colony of ecoli
-0.5
N.D.
-1.1
-0.8
-0.1
nutrient
L-tyrosine
-0.6
N.D.
-0.5
-1.3
-0.1
RCH2 grown on a colony of ecoli
-1.1
N.D.
-0.2
-0.7
-0.1
RCH2 grown on a colony of Serratia
-0.4
N.D.
+0.0
-1.6
+0.0
nutrient
L-tyrosine
-0.1
N.D.
-0.3
-1.5
-0.1
stress
Nalidixic 0.00390625 mg/ml
-0.8
N.D.
+0.2
-0.7
-0.6
stress
Def Cephalothin 0.08 mg/ml
-1.2
N.D.
-0.2
-0.3
-0.0
stress
Choline Lysine 20 mM
-1.1
N.D.
-0.3
-0.1
-0.0
nitrogen source
L-Glutamic (N)
-1.1
N.D.
-0.4
-0.3
+0.1
lb
LB
-0.7
N.D.
-0.1
-0.6
-0.2
stress
2-Furfuraldehyde 0.05 vol%
+0.0
N.D.
-0.2
-1.1
-0.2
stress
Nickel (II) chloride 0.8 mM
-1.1
N.D.
+0.0
-0.4
+0.1
stress
A22 0.005 mg/ml
-0.9
N.D.
-0.0
-0.5
+0.1
stress
Vanillin 2 mM
-0.9
N.D.
-0.4
-0.1
+0.2
stress
methylglyoxal 0.0016 vol%
-1.1
N.D.
-0.2
+0.2
+0.1
RCH2 grown on a colony of N2F3
-0.9
N.D.
-0.2
+0.3
+0.2
stress
Carbenicillin 0.008 mg/ml
+0.7
N.D.
-0.1
-0.7
-0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.6
N.D.
-0.3
-0.4
+0.2
stress
Zinc 0.12 mM
+0.8
N.D.
+0.2
-0.8
-0.1
nitrogen source
nitrite (N)
+1.0
N.D.
+0.6
-1.3
-0.1
stress
perchlorate 12.5 mM
+0.9
N.D.
+0.3
-0.4
-0.0
stress
syringaldehyde 3 mM
+0.6
N.D.
-0.2
+0.6
+0.0
stress
Furfuryl Alcohol 0.05 vol%
+2.1
N.D.
-0.1
-0.8
+0.0
stress
Def Benzethonium chloride 0.008 mM
+0.9
N.D.
+0.3
+0.2
-0.1
stress
Cephalothin 0.04 mg/ml
+1.0
N.D.
-0.2
+0.4
+0.1
stress
Def Carbenicillin 0.008 mg/ml
+1.3
N.D.
+0.2
+0.1
-0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.3
N.D.
+0.1
-0.0
+0.1
carbon source
RCH2 defined media
+1.1
N.D.
+0.3
+0.1
-0.0
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