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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0776 and Psest_0777 are separated by 4 nucleotides
Psest_0777 and Psest_0778 are separated by 84 nucleotides
Psest_0778 and Psest_0779 are separated by 195 nucleotides
Psest_0779 and Psest_0780 overlap by 1 nucleotides
Psest_0776: Psest_0776 - FOG: Ankyrin repeat, at 845,785 to 846,339
_0776
Psest_0777: Psest_0777 - cyanate hydratase, at 846,344 to 846,793
_0777
Psest_0778: Psest_0778 - Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin, at 846,878 to 847,639
_0778
Psest_0779: Psest_0779 - tyrosine aminotransferase (EC 2.6.1.57)
(from data)
, at 847,835 to 849,031
_0779
Psest_0780: Psest_0780 - Pterin-4a-carbinolamine dehydratase, at 849,031 to 849,387
_0780
Group
Condition
Psest
_0776
Psest
_0777
Psest
_0778
Psest
_0779
Psest
_0780
carbon source
L-tyrosine (C)
+0.1
+0.5
+0.0
-4.8
N.D.
carbon source
L-tyrosine (C)
-0.3
+0.1
+1.1
-5.0
N.D.
stress
Def Cephalothin 0.08 mg/ml
-0.2
-0.6
-1.0
-1.2
N.D.
RCH2 grown on a colony of Serratia
-0.1
-0.8
-1.7
-0.4
N.D.
stress
Carbenicillin 0.008 mg/ml
-0.6
-0.5
-0.7
-0.5
N.D.
stress
Nalidixic 0.00390625 mg/ml
-0.8
+0.2
-0.8
-0.8
N.D.
stress
Nickel (II) chloride 0.8 mM
-0.4
-0.1
-0.7
-1.1
N.D.
stress
Nalidixic 0.00390625 mg/ml
-0.7
-0.5
-0.7
+0.1
N.D.
nitrogen source
L-Glutamic (N)
-0.0
-0.8
+0.4
-1.1
N.D.
carbon source
propionate (C)
-0.5
-0.9
+0.3
-0.2
N.D.
stress
Choline Lysine 20 mM
-0.1
-0.6
+0.5
-1.1
N.D.
stress
syringaldehyde 4 mM
-0.2
+0.3
-1.0
-0.3
N.D.
stress
methylglyoxal 0.0016 vol%
+0.4
-0.6
+0.4
-1.1
N.D.
RCH2 grown on a colony of ecoli
+0.2
-0.3
+0.3
-1.1
N.D.
RCH2 grown on a colony of N2A2
+0.6
+0.3
-1.0
-0.3
N.D.
stress
L-Lysine 200 mM
-0.6
+0.9
-0.7
+0.0
N.D.
stress
Furfuryl Alcohol 0.05 vol%
-0.1
-0.9
-0.6
+2.1
N.D.
stress
Choline chloride 90 mM
+0.9
+0.1
-0.8
+0.5
N.D.
RCH2 grown on a colony of N2F3
+0.1
+0.3
+1.6
-0.9
N.D.
stress
Def 5-Hydroxymethylfurfural 5 mM
-0.2
-0.2
+0.7
+1.0
N.D.
stress
perchlorate 12.5 mM
+0.4
-0.3
+0.4
+0.9
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.1
-0.2
+0.8
+1.3
N.D.
temperature
LB 30C timecourse2 timepoint 1
+0.3
+0.5
+0.9
+0.3
N.D.
nitrogen source
nitrite (N)
+0.0
+0.6
+0.4
+1.0
N.D.
stress
Def Thallium(I) acetate 0.125 mg/ml
-0.2
+0.5
+0.7
+0.9
N.D.
carbon source
butyrate (C)
+0.4
+0.6
+0.2
+0.8
N.D.
stress
Def Polymyxin B sulfate 0.0001 mg/ml
-0.0
+0.6
+0.6
+0.8
N.D.
carbon source
RCH2 defined media
+0.3
+0.7
+0.5
+1.1
N.D.
stress
Def Benzethonium chloride 0.008 mM
+0.5
+0.8
+0.3
+0.9
N.D.
stress
Cephalothin 0.04 mg/ml
+0.1
+0.8
+0.7
+1.0
N.D.
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