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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0770 and Psest_0771 are separated by 118 nucleotides
Psest_0771 and Psest_0772 are separated by 339 nucleotides
Psest_0772 and Psest_0773 overlap by 7 nucleotides
Psest_0773 and Psest_0774 are separated by 13 nucleotides
Psest_0770: Psest_0770 - alkylphosphonate utilization operon protein PhnA, at 839,379 to 839,723
_0770
Psest_0771: Psest_0771 - Acyl-CoA hydrolase, at 839,842 to 840,345
_0771
Psest_0772: Psest_0772 - Cytochrome c553, at 840,685 to 841,371
_0772
Psest_0773: Psest_0773 - Cytosine deaminase and related metal-dependent hydrolases, at 841,365 to 842,600
_0773
Psest_0774: Psest_0774 - cytosine permease
(from data)
, at 842,614 to 843,891
_0774
Group
Condition
Psest
_0770
Psest
_0771
Psest
_0772
Psest
_0773
Psest
_0774
nitrogen source
Cytosine (N)
+0.2
-0.5
-0.4
-4.2
-3.6
nitrogen source
Cytosine (N)
+0.0
-0.1
-0.4
-3.4
-3.4
nitrogen source
Cytosine (N)
+0.4
-0.5
-0.3
-3.5
-3.3
carbon source
L-Proline (C)
-0.1
-2.3
-0.3
-0.1
-0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.5
-2.3
-0.9
-0.1
+0.0
stress
Chlorate 75 mM
-0.3
-1.4
-0.3
-0.5
-0.1
carbon source
L-Proline (C)
+0.1
-2.2
-0.1
+0.2
+0.0
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.5
+0.6
-1.0
+0.1
-0.4
RCH2 grown on a colony of Serratia
+0.7
-1.3
+0.2
+0.1
+0.2
stress
nitrate 250 mM
+0.5
+0.8
-0.8
-0.4
-0.1
stress
L-Lysine 200 mM
-0.3
-0.8
+0.4
+0.6
+0.3
RCH2 grown on a colony of N2F3
+0.6
-0.6
+0.3
+0.7
-0.4
stress
D-Cycloserine 0.032 mg/ml
-0.9
+1.7
+0.0
+0.1
-0.3
stress
Dimethyl Sulfoxide 5 vol%
+0.4
+0.4
+0.8
-0.5
-0.3
RCH2 grown on a colony of Serratia
+1.1
+0.2
-0.7
+0.3
+0.1
stress
Choline chloride 90 mM
-1.1
+2.5
-0.5
+0.1
+0.0
carbon source
butyrate (C)
+0.2
+1.4
-0.7
+0.2
-0.0
stress
Cephalothin 0.04 mg/ml
+1.3
+0.8
-0.8
-0.1
+0.0
stress
Cobalt chloride 0.05 mM
+0.5
+1.2
-0.5
+0.3
-0.2
stress
D-Cycloserine 0.032 mg/ml
+0.0
+1.8
-0.2
+0.3
-0.4
stress
Def Carbenicillin 0.008 mg/ml
+1.3
+1.3
-0.8
-0.1
-0.2
stress
nitrate 200 mM
+0.6
+1.2
-0.5
-0.0
+0.2
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.3
+1.1
+0.3
+0.6
+0.2
stress
Paraquat dichloride 0.015 mg/ml
+0.4
+1.5
+0.3
-0.4
+0.2
stress
Gentamicin 0.0016 mg/ml
+0.8
+1.9
-0.7
+0.4
-0.1
stress
Furfuryl Alcohol 0.05 vol%
+0.6
+1.6
+0.0
+0.4
-0.2
stress
Choline chloride 90 mM
-0.2
+2.7
-0.5
+0.3
+0.1
carbon source
L-tyrosine (C)
-0.6
+3.9
+0.0
-0.4
-0.3
stress
Choline Lysine 20 mM
+0.0
+1.7
+0.6
+0.5
+0.1
carbon source
L-tyrosine (C)
-0.5
+4.2
-0.4
+0.3
+0.4
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