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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0714 and Psest_0715 are separated by 113 nucleotides
Psest_0715 and Psest_0716 are separated by 53 nucleotides
Psest_0716 and Psest_0717 are separated by 121 nucleotides
Psest_0717 and Psest_0718 are separated by 429 nucleotides
Psest_0714: Psest_0714 - tRNA_Lys_TTT, at 783,281 to 783,356
_0714
Psest_0715: Psest_0715 - NADH dehydrogenase, FAD-containing subunit, at 783,470 to 784,765
_0715
Psest_0716: Psest_0716 - Protein of unknown function (DUF3094)., at 784,819 to 784,992
_0716
Psest_0717: Psest_0717 - Protein of unknown function (DUF1631)., at 785,114 to 787,372
_0717
Psest_0718: Psest_0718 - nicotinate-nucleotide pyrophosphorylase, at 787,802 to 788,650
_0718
Group
Condition
Psest
_0714
Psest
_0715
Psest
_0716
Psest
_0717
Psest
_0718
vitamin
No vitamins t2
N.D.
-2.0
-4.0
-0.2
-2.9
vitamin
With vitamins t2
N.D.
-2.7
-4.2
-0.0
-0.2
vitamin
No vitamins t1
N.D.
-1.0
-1.8
-0.2
-3.0
stress
Def Phosphomycin 0.125 mg/ml
N.D.
+0.2
-1.2
-1.6
-2.5
carbon source
L-Malic (C)
N.D.
+0.0
-0.8
+0.2
-4.0
stress
L-Lysine 200 mM
N.D.
-0.2
-0.2
-2.6
-1.5
nutrient
Min media with glucose
N.D.
-1.0
-3.0
+0.2
-0.6
carbon source
L-tyrosine (C)
N.D.
+0.2
-2.0
+2.0
-4.7
stress
Def Cephalothin 0.04 mg/ml
N.D.
-0.4
+0.4
+0.2
-4.3
stress
Def Neomycin 0.0008 mg/ml
N.D.
-0.4
+0.5
-1.2
-2.9
metal limitation
Lactate-nitrite; anaerobic; sample3
N.D.
-0.1
-1.2
+0.8
-3.4
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
-1.2
-1.0
+1.5
-3.0
carbon source
RCH2 defined media
N.D.
-0.2
-0.4
+0.6
-3.6
stress
Def Doxycycline hyclate 0.0002 mg/ml
N.D.
+0.1
+0.5
-0.0
-4.1
stress
Def Lomefloxacin 0.00004 mM
N.D.
-0.0
+0.3
+0.6
-4.1
stress
Def Neomycin 0.0002 mg/ml
N.D.
-0.3
-0.1
+0.8
-3.5
stress
Def Cisplatin 0.0002 mg/ml
N.D.
-0.3
+0.2
+1.0
-4.0
stress
Def Vancomycin 0.008 mg/ml
N.D.
+0.1
+0.0
+0.6
-3.7
stress
Def Benzethonium chloride 0.008 mM
N.D.
+0.0
+0.8
+1.2
-4.2
stress
Def Polymyxin B sulfate 0.0001 mg/ml
N.D.
-0.1
+0.2
+1.5
-3.7
stress
Def Dimethyl Sulfoxide 5 vol%
N.D.
-0.1
+0.3
+0.9
-3.1
stress
Def Polymyxin B sulfate 0.00008 mg/ml
N.D.
-0.1
+0.3
+1.3
-3.2
stress
Def Thallium(I) acetate 0.125 mg/ml
N.D.
+0.2
-0.2
+2.3
-3.8
stress
Def Chloride 400 mM
N.D.
-0.8
+0.4
+2.5
-3.3
carbon source
L-tyrosine (C)
N.D.
+0.3
+0.3
+2.4
-3.9
stress
Def Vancomycin 0.016 mg/ml
N.D.
+0.5
+0.8
+1.2
-3.0
stress
Phosphomycin 0.012 mg/ml
N.D.
+0.5
+0.7
+0.9
-2.5
stress
Def Chlorate 40 mM
N.D.
+0.1
+1.0
+1.4
-2.8
stress
Def Chlorate 20 mM
N.D.
+0.1
+0.9
+1.3
-2.7
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
+0.3
+0.6
+1.8
-2.4
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