Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0708 and Psest_0709 are separated by 52 nucleotidesPsest_0709 and Psest_0710 overlap by 4 nucleotidesPsest_0710 and Psest_0711 are separated by 166 nucleotidesPsest_0711 and Psest_0712 are separated by 196 nucleotides Psest_0708: Psest_0708 - outer membrane assembly lipoprotein YfiO, at 777,283 to 778,272 _0708 Psest_0709: Psest_0709 - pseudouridine synthase, RluA family, at 778,325 to 779,452 _0709 Psest_0710: Psest_0710 - uncharacterized protein, YfiH family, at 779,449 to 780,186 _0710 Psest_0711: Psest_0711 - ATP-dependent chaperone ClpB, at 780,353 to 782,917 _0711 Psest_0712: Psest_0712 - tRNA_Asn_GTT, at 783,114 to 783,189 _0712
Group Condition Psest_0708 Psest_0709 Psest_0710 Psest_0711 Psest_0712
stress Def Cephalothin 0.04 mg/ml -4.9 -0.9 N.D. -0.2 N.D.
stress Aluminum chloride 0.3 mM -4.3 -0.5 N.D. +0.0 N.D.
stress Choline Lysine 20 mM -1.8 -2.1 N.D. +0.0 N.D.
temperature LB 30C timecourse1 timepoint 3 -1.7 -1.3 N.D. -0.7 N.D.
stress methylglyoxal 0.0016 vol% -2.2 -1.0 N.D. -0.1 N.D.
RCH2 grown on a colony of Serratia -2.5 -0.7 N.D. -0.0 N.D.
stress Furfuryl Alcohol 0.05 vol% -2.2 -0.8 N.D. -0.2 N.D.
stress 2-Furfuraldehyde 0.05 vol% -2.8 -0.5 N.D. +0.1 N.D.
stress acetate 80 mM -2.5 -0.7 N.D. +0.2 N.D.
RCH2 grown on a colony of N2F3 -3.6 +0.8 N.D. -0.0 N.D.
stress Nickel (II) chloride 0.9 mM -2.6 +0.1 N.D. -0.1 N.D.
anaerobic Nitrite/ lactate media with Nitrite 20mM -2.4 -0.3 N.D. +0.0 N.D.
temperature LB 30C timecourse2 timepoint 2 -1.7 -0.8 N.D. -0.1 N.D.
carbon source D-Fructose (C) -1.6 -1.0 N.D. +0.0 N.D.
stress Chlorate 75 mM -2.4 +0.1 N.D. -0.1 N.D.
stress L-Lysine 200 mM -1.7 -0.8 N.D. +0.1 N.D.
stress nitrate 200 mM -2.6 -0.1 N.D. +0.2 N.D.
stress Carbenicillin 0.0065 mg/ml -2.0 -0.5 N.D. +0.1 N.D.
carbon source Glycolic Acid (C) -2.6 +0.4 N.D. -0.3 N.D.
stress 5-Hydroxymethylfurfural 5 mM -3.0 +0.7 N.D. +0.1 N.D.
stress Nickel (II) chloride 0.9 mM -2.5 +0.4 N.D. -0.0 N.D.
stress Cephalothin 0.04 mg/ml -2.4 +0.2 N.D. +0.2 N.D.
stress Def 2-Furfuraldehyde 0.032 vol% -1.8 -1.0 N.D. +0.9 N.D.
stress Nickel (II) chloride 0.8 mM -2.2 +0.3 N.D. +0.2 N.D.
stress nitrate 250 mM -1.9 +0.7 N.D. +0.5 N.D.
stress Lactate-nitrate; anaerobic; nickel stress sample1 -1.7 +1.0 N.D. +0.2 N.D.
stress Def Benzalkonium Chloride 0.002 mg/ml -1.3 +1.3 N.D. +0.6 N.D.
nutrient L-tyrosine +1.7 -0.8 N.D. +0.1 N.D.
RCH2 grown on a colony of Serratia +2.2 -0.7 N.D. +0.3 N.D.
carbon source L-tyrosine (C) +2.7 +1.5 N.D. +0.0 N.D.
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