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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0702 and Psest_0703 are separated by 140 nucleotides
Psest_0703 and Psest_0704 are separated by 217 nucleotides
Psest_0704 and Psest_0705 are separated by 40 nucleotides
Psest_0705 and Psest_0706 are separated by 76 nucleotides
Psest_0702: Psest_0702 - Methyl-accepting chemotaxis protein, at 768,870 to 770,831
_0702
Psest_0703: Psest_0703 - diguanylate cyclase (GGDEF) domain, at 770,972 to 772,567
_0703
Psest_0704: Psest_0704 - Uncharacterized protein conserved in bacteria, at 772,785 to 773,843
_0704
Psest_0705: Psest_0705 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 773,884 to 775,278
_0705
Psest_0706: Psest_0706 - His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 775,355 to 776,947
_0706
Group
Condition
Psest
_0702
Psest
_0703
Psest
_0704
Psest
_0705
Psest
_0706
carbon source
butyrate (C)
-0.2
-0.2
-0.1
-3.1
-2.7
carbon source
butyrate (C)
+0.3
-0.1
-0.0
-2.8
-3.1
carbon source
L-Leucine (C)
-0.3
-0.3
-0.1
-1.7
-1.9
carbon source
L-Leucine (C)
+0.1
-0.2
-0.2
-1.6
-1.6
carbon source
D,L-Lactate (C)
-0.2
+0.0
-0.1
-1.5
-1.6
carbon source
Glycerol (C)
-0.1
-0.2
-0.1
-1.4
-1.6
stress
Furfuryl Alcohol 0.05 vol%
-1.2
-0.2
-0.6
-0.8
-0.5
carbon source
Glycerol (C)
-0.2
+0.0
-0.1
-1.4
-1.4
carbon source
D-Maltose (C)
-0.3
+0.1
+0.2
-1.4
-1.7
carbon source
D-Maltose (C)
-0.4
-0.1
+0.3
-1.4
-1.5
carbon source
D-Maltose (C)
+0.0
-0.0
-0.1
-1.4
-1.4
stress
Gentamicin 0.0016 mg/ml
-0.0
-0.3
-1.8
-0.3
-0.4
stress
Chloride 200 mM
-0.7
-0.1
-0.4
-1.0
-0.7
nitrogen source
L-Glutamine (N)
+0.1
+0.0
-0.4
-1.4
-1.1
nitrogen source
L-Glutamine (N)
-0.1
-0.1
+0.2
-1.2
-1.3
carbon source
D,L-Lactate (C)
-0.1
-0.1
+0.2
-1.0
-1.6
nitrogen source
Urea (N)
-0.3
-0.1
-0.1
-1.2
-0.9
carbon source
L-Lactate (C)
-0.2
-0.2
+0.3
-1.0
-1.3
carbon source
L-Lactate (C)
+0.1
-0.2
+0.1
-0.7
-1.4
nitrogen source
Adenine (N)
+0.4
-0.2
-0.1
-1.2
-1.1
nitrogen source
L-Glutamic (N)
+0.1
+0.1
+0.4
-0.9
-1.3
carbon source
L-tyrosine (C)
-1.0
+0.2
-0.8
+0.3
-0.1
stress
Lactate-nitrate; anaerobic; nickel stress sample1
+0.4
+0.3
-0.3
-0.8
-1.0
carbon source
butyrate (C)
+0.6
-0.2
+0.2
-1.2
-0.3
stress
Def Benzethonium chloride 0.008 mM
+0.4
-0.2
+0.6
-0.7
-0.8
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.7
+0.1
+0.8
-1.1
-1.2
stress
Carbenicillin 0.008 mg/ml
-0.4
+0.1
-0.2
+1.1
+1.0
carbon source
L-Glutamine (C)
-0.3
-0.1
-0.1
+2.0
+1.8
carbon source
L-Glutamine (C)
-0.4
-0.2
-0.2
+2.2
+1.9
carbon source
L-Glutamine (C)
+0.0
-0.2
-0.1
+2.0
+1.7
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