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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0689 and Psest_0690 are separated by 116 nucleotides
Psest_0690 and Psest_0691 are separated by 204 nucleotides
Psest_0691 and Psest_0692 overlap by 4 nucleotides
Psest_0692 and Psest_0693 are separated by 174 nucleotides
Psest_0689: Psest_0689 - tRNA_Leu_CAG, at 753,471 to 753,557
_0689
Psest_0690: Psest_0690 - tRNA_Leu_CAG, at 753,674 to 753,760
_0690
Psest_0691: Psest_0691 - ribonuclease R, at 753,965 to 756,466
_0691
Psest_0692: Psest_0692 - rRNA methylase, putative, group 3, at 756,463 to 757,218
_0692
Psest_0693: Psest_0693 - His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 757,393 to 759,555
_0693
Group
Condition
Psest
_0689
Psest
_0690
Psest
_0691
Psest
_0692
Psest
_0693
stress
methylglyoxal 0.0016 vol%
N.D.
N.D.
-4.2
-1.9
-0.3
stress
Doxycycline hyclate 0.0002 mg/ml
N.D.
N.D.
-3.3
-1.0
-0.8
RCH2 grown on a colony of Serratia
N.D.
N.D.
-0.2
-2.1
-1.5
stress
Furfuryl Alcohol 0.05 vol%
N.D.
N.D.
-0.9
-2.2
-0.3
stress
Cobalt chloride 0.08 mM
N.D.
N.D.
-2.6
-0.7
+0.3
nitrogen source
L-Alanine (N)
N.D.
N.D.
-2.8
-0.4
+0.6
stress
Cobalt chloride 0.05 mM
N.D.
N.D.
-1.6
-1.5
+0.7
nitrogen source
Glycine (N)
N.D.
N.D.
-2.8
+0.3
+0.4
stress
Cobalt chloride 0.05 mM
N.D.
N.D.
-1.0
-1.7
+0.7
stress
Gentamicin 0.0016 mg/ml
N.D.
N.D.
-3.0
+0.7
+0.4
carbon source
L-tyrosine (C)
N.D.
N.D.
-2.4
-1.6
+2.2
stress
Fusidic 0.016 mg/ml
N.D.
N.D.
-2.8
+0.9
+0.5
nitrogen source
Parabanic Acid (N)
N.D.
N.D.
-2.0
+0.7
+0.7
stress
nitrate 250 mM
N.D.
N.D.
-3.1
+1.2
+1.5
carbon source
L-tyrosine (C)
N.D.
N.D.
-1.5
+0.2
+2.0
stress
Neomycin 0.004 mg/ml
N.D.
N.D.
-1.7
+0.5
+1.8
stress
Neomycin 0.004 mg/ml
N.D.
N.D.
-1.5
+1.0
+1.1
stress
Def Carbenicillin 0.008 mg/ml
N.D.
N.D.
-1.8
+1.7
+0.8
radiation
Ionizing radiation, 319.06 Gy,
N.D.
N.D.
-0.8
-0.6
+2.3
nitrogen source
nitrite (N)
N.D.
N.D.
-1.6
+1.4
+1.3
stress
A22 0.005 mg/ml
N.D.
N.D.
-1.4
+0.3
+2.2
stress
Cephalothin 0.04 mg/ml
N.D.
N.D.
-2.3
+2.1
+1.7
carbon source
butyrate (C)
N.D.
N.D.
-1.1
+0.6
+2.1
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
N.D.
-1.6
+1.9
+1.5
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
-1.1
+1.1
+1.9
anaerobic
nitrate reduction - anaerobic
N.D.
N.D.
-0.9
+1.5
+1.5
radiation
Ionizing radiation, 0 Gy
N.D.
N.D.
-0.7
+0.8
+2.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
N.D.
-1.8
+2.3
+1.9
nitrogen source
nitrite (N)
N.D.
N.D.
-1.6
+2.2
+2.1
stress
Choline chloride 90 mM
N.D.
N.D.
+2.0
+2.3
-0.5
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